当前解析结果
SmilChr04G004101| 统一新 Gene ID | SmilChr04G004101 |
|---|---|
| 名称 | SmilChr04G004101 |
| 描述 | protein ALWAYS EARLY 3-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 55977383 - 55986866 / + |
| NCBI Gene ID | LOC131020976 |
|---|---|
| GeneID | 131020976 |
| locus_tag | - |
| NCBI Name | LOC131020976 |
| 原始查询 | LOC131020976 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein ALWAYS EARLY 3-like |
| 产物 | protein ALWAYS EARLY 3-like |
| Arabidopsis | AT3G21430 (ALY3)DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:821697] identity=46.6; qcov=1.05; evalue=0; confidence=high |
| Rice | Os01g0193900 (OsALYL1)- identity=49.3; qcov=0.202; evalue=8.27e-61; confidence=weak |
| GO | GO:0000003 (GO:0000003); GO:0003677 (DNA binding); GO:0005654 (nucleoplasm); GO:0006351 (DNA-templated transcription); GO:0006357 (regulation of transcription by RNA polymerase II); GO:0017053 (transcription repressor complex); GO:0051726 (regulation of cell cycle) |
| KEGG | - |
| Pfam | PF00249 (Myb_DNA-binding); PF06584 (DIRP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020976 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057806017.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057806017.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057806017.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057806017.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057806017.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:55979561 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr4:55980109 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A20,B30,C13,C41 |
Chr4:55980651 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B21,B33,B62,C48 |
Chr4:55981160 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A20,B30,C41 |
Chr4:55981243 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C53,C86 |
Chr4:55981497 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A20,B30 |
Chr4:55981549 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B101,B55 |
Chr4:55981552 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr4:55981662 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B14,C24,C34,C40,C50 |
Chr4:55981765 |
A |
AT |
1bp_insertion | frameshift_variant | 18 | A1,A16,A19,A6,B113,B135,B29,B39,B5,B74,B83,B95,C19,C24,C32,C47,C68,C79 |
Chr4:55981770 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr4:55981820 |
G |
GA |
1bp_insertion | frameshift_variant | 68 | A13,A14,A15,A19,A2,A24,A9,B100,B101,B106,B108,B111,B115,B119,B120,B122,B125,B127,B129,B13,B131,B134,B136,B138,B14,B18,B19,B21,B27,B35,B47,B49,B52,B59,B63,B74,B86,B87,B91,B92,C1,C17,C23,C24,C30,C34,C36,C37,C39,C40,C45,C47,C48,C50,C54,C61,C65,C7,C71,C73,C74,C75,C79,C86,C9,D10,D4,D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057806017.1PF00249
Myb_DNA-binding 45-81 aa
PF06584
DIRP 628-729 aa
XP_057806018.1PF00249
Myb_DNA-binding 45-81 aa
PF06584
DIRP 609-710 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806017.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 45 | 81 | 4.1e-07 | 30.7 | Myb-like DNA-binding domain |
XP_057806017.1 |
Pfam | PF06584 |
DIRP | Family | 628 | 729 | 5.8e-34 | 117.2 | DIRP |
XP_057806018.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 45 | 81 | 4e-07 | 30.8 | Myb-like DNA-binding domain |
XP_057806018.1 |
Pfam | PF06584 |
DIRP | Family | 609 | 710 | 5.6e-34 | 117.2 | DIRP |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。