Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G004129`

染色体: Chr04 坐标: 56113800-56123500 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G004129`
名称	SmilChr04G004129
描述	phospholipase D zeta 1
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	56113800 - 56123500 / `+`

ID 对照

NCBI Gene ID	`LOC131021004`
GeneID	`131021004`
locus_tag	`-`
NCBI Name	`LOC131021004`
原始查询	`LOC131021004`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phospholipase D zeta 1
产物	phospholipase D zeta 1
Arabidopsis	`AT3G16785` (PLDP1) phospholipase D P1 [Source:NCBI gene (formerly Entrezgene);Acc:820932] identity=73.1; qcov=0.977; evalue=0; confidence=high
Rice	`Os07g0260400` (OsPLDdelta3) - identity=34.6; qcov=0.243; evalue=5.34e-24; confidence=weak
GO	GO:0004630 (D-type glycerophospholipase activity); GO:0005886 (plasma membrane); GO:0006654 (phosphatidic acid biosynthetic process); GO:0009395 (phospholipid catabolic process); GO:0035556 (intracellular signal transduction)
KEGG	smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00565 (Ether lipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00169 (PH); PF00614 (PLDc); PF13091 (PLDc_2)
InterPro	-
eggNOG	-
NR	GeneID:131021004

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasmic vesicle	细胞质囊泡	0.80000	`XP_057806056.1`
2	Cytoplasm	细胞质	0.80000	`XP_057806057.1`
3	Vesicle	囊泡	0.80000	`XP_057806056.1`
4	Endosome	内体	0.80000	`XP_057806057.1`
5	Cytosol	细胞质基质	0.60000	`XP_057806057.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:56115415`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B32,B41,B9,C11,C69
`Chr4:56116669`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A21,C45
`Chr4:56119926`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr4:56119950`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C16
`Chr4:56120403`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B132,C40,C79
`Chr4:56120576`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:56121478`	`GA`	`G`	1bp_deletion	frameshift_variant	1	C38
`Chr4:56121478`	`GA`	`G`	1bp_deletion	CDS_variant	1	C38
`Chr4:56121499`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B80
`Chr4:56122540`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C22

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806056.1

1114 aa

557

1114

PLDc

PLDc_2

PF00169 PH 258-347 aa PF00614 PLDc 393-589 aa PF00614 PLDc 774-899 aa PF00614 PLDc 914-1004 aa PF13091 PLDc_2 916-963 aa

XP_057806057.1

988 aa

494

988

PLDc

PLDc_2

PF00169 PH 132-221 aa PF00614 PLDc 267-463 aa PF00614 PLDc 648-773 aa PF00614 PLDc 788-879 aa PF13091 PLDc_2 790-837 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806056.1`	Pfam	`PF00169`	PH	Domain	258	347	4.1e-07	31.2	PH domain
`XP_057806056.1`	Pfam	`PF00614`	PLDc	Domain	393	589	1.1e-61	209.5	Phospholipase D
`XP_057806056.1`	Pfam	`PF00614`	PLDc	Domain	774	899	1.1e-61	209.5	Phospholipase D
`XP_057806056.1`	Pfam	`PF00614`	PLDc	Domain	914	1004	1.1e-61	209.5	Phospholipase D
`XP_057806056.1`	Pfam	`PF13091`	PLDc_2	Domain	916	963	5e-15	56.2	Cardiolipin synthase, PLD-like domain
`XP_057806057.1`	Pfam	`PF00169`	PH	Domain	132	221	3.6e-07	31.4	PH domain
`XP_057806057.1`	Pfam	`PF00614`	PLDc	Domain	267	463	6.5e-62	210.3	Phospholipase D
`XP_057806057.1`	Pfam	`PF00614`	PLDc	Domain	648	773	6.5e-62	210.3	Phospholipase D
`XP_057806057.1`	Pfam	`PF00614`	PLDc	Domain	788	879	6.5e-62	210.3	Phospholipase D
`XP_057806057.1`	Pfam	`PF13091`	PLDc_2	Domain	790	837	3.7e-15	56.6	Cardiolipin synthase, PLD-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057950073.1
AAATATCCATTACAGTTTAGATCTCCATACACTTATATTCAAATTTTGATTTTTTCATTTGGATTTTGAATTTTCAATACAAACATACATTCATACATACATATATACATATATATTTTTAGAGAGAGAGGGGGAGAGAGAGAACAGAGGGGAGATGTCGTCGACGGAGCAATTGATGGGCGGCGGCGGCGGCAGTGGGGCGAAGTACGTCCAAATGCAATCGGAGACGGATTTTACGTCGATGGCGTCGTCGTTTTATT...

XM_057950074.1
TTCAAGTGGCAGTTAATGAAGAAAGCTTCGCAAGTTTTTTATTTACACTTTGCATTGAAGAAGCGAAAATTTATTGAGGAGATCCACGAAAAGCAAGAGCAGGTCAAAGAATGGCTTCAAAATCTAGGAATAGGAGACCATGCAACAGTTATTCAAGATGATGAGGATGCAGATGAGGCTGTTCCTTCACGCAATGACGAGATTGCTAAAAACAGGTCGTTTTTTGTTCAGAGATGTTCCATCAAGTGCTGCACTTTCAA...

CDS

2 records

下载 CDS FASTA

LOC131021004
ATGTCGTCGACGGAGCAATTGATGGGCGGCGGCGGCGGCAGTGGGGCGAAGTACGTCCAAATGCAATCGGAGACGGATTTTACGTCGATGGCGTCGTCGTTTTATTCGTTCCATCACCATGATTATGCGGACGGCGAGCCGGCGCGGATTTTTTACGAGCTGCCTAAAGCTATGATTATTCAAGTTTCGCGGCCGGATGCTGGTGATATAAGTCCCATGCAACTGACATACACGATTGAGTTCCGATACAAACAGTTCAA...

LOC131021004
ATGCAACAGTTATTCAAGATGATGAGGATGCAGATGAGGCTGTTCCTTCACGCAATGACGAGATTGCTAAAAACAGGTCGTTTTTTGTTCAGAGATGTTCCATCAAGTGCTGCACTTTCAATTATTCGGCCGGCACTTTTAAGGCAGCATTCAATGTCTGACCGAGCAAGAGGAGCAATGCAGGGATACTTGAATCACTTTTTAAGTAACATAGATATAGTAAATTCCCAGGAGGTGTGTAAGTTTTTGGAAGTTTCCAA...

Protein

2 records

下载 Protein FASTA

XP_057806056.1
MSSTEQLMGGGGGSGAKYVQMQSETDFTSMASSFYSFHHHDYADGEPARIFYELPKAMIIQVSRPDAGDISPMQLTYTIEFRYKQFKWQLMKKASQVFYLHFALKKRKFIEEIHEKQEQVKEWLQNLGIGDHATVIQDDEDADEAVPSRNDEIAKNRDVPSSAALSIIRPALLRQHSMSDRARGAMQGYLNHFLSNIDIVNSQEVCKFLEVSKLSFSPEYGPKLKEDYIMVKHLPKILDNEDRIKCCACPWFCCCRDNWQ...

XP_057806057.1
MQQLFKMMRMQMRLFLHAMTRLLKTGRFLFRDVPSSAALSIIRPALLRQHSMSDRARGAMQGYLNHFLSNIDIVNSQEVCKFLEVSKLSFSPEYGPKLKEDYIMVKHLPKILDNEDRIKCCACPWFCCCRDNWQKVWAVLKPGFLAFLKDPFDPNPIDIVVFDVLPASDGNGDSRVSLAKEVHDHNPLRHYFRVTCGTRSIKLRTKSDEKVKDWVAAINDAAIRPPEGWCHPHRFGSFAPPRGLTEDSSQAQWFVDGRAA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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