Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G004133`

染色体: Chr04 坐标: 56148237-56152298 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G004133`
名称	SmilChr04G004133
描述	two-component response regulator ARR2-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	56148237 - 56152298 / `+`

ID 对照

NCBI Gene ID	`LOC131021009`
GeneID	`131021009`
locus_tag	`-`
NCBI Name	`LOC131021009`
原始查询	`LOC131021009`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	two-component response regulator ARR2-like
产物	two-component response regulator ARR2-like
Arabidopsis	`AT3G16857` (RR1) response regulator 1 [Source:NCBI gene (formerly Entrezgene);Acc:820940] identity=51.6; qcov=1.04; evalue=0; confidence=high
Rice	`Os03g0224200` (ORR1) - identity=64; qcov=0.46; evalue=2.79e-126; confidence=medium
GO	GO:0000160 (phosphorelay signal transduction system); GO:0003677 (DNA binding); GO:0003700 (DNA-binding transcription factor activity); GO:0009736 (cytokinin-activated signaling pathway)
KEGG	smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00072 (Response_reg); PF00249 (Myb_DNA-binding)
InterPro	-
eggNOG	-
NR	GeneID:131021009

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057806063.1`
2	Chromosome	染色体	0.00000	`XP_057806063.1`
3	Centromere	着丝粒	0.00000	`XP_057806063.1`
4	Chromatin	染色质	0.00000	`XP_057806063.1`
5	Telomere	端粒	0.00000	`XP_057806063.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:56149691`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A13
`Chr4:56150597`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr4:56150657`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B83
`Chr4:56150786`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr4:56150906`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A7
`Chr4:56150921`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B83
`Chr4:56151275`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C63
`Chr4:56151296`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr4:56151369`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B83
`Chr4:56151506`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B113,B21,B71,C25,C45

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806063.1

710 aa

355

710

Response_reg

Myb_DNA-binding

PF00072 Response_reg 33-141 aa PF00249 Myb_DNA-binding 216-266 aa

XP_057806064.1

677 aa

338

677

Response_reg

Myb_DNA-binding

PF00072 Response_reg 33-141 aa PF00249 Myb_DNA-binding 216-266 aa

XP_057806065.1

676 aa

338

676

Response_reg

Myb_DNA-binding

PF00072 Response_reg 33-141 aa PF00249 Myb_DNA-binding 216-266 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806063.1`	Pfam	`PF00072`	Response_reg	Domain	33	141	1.1e-24	87.4	Response regulator receiver domain
`XP_057806063.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	216	266	7.5e-09	36.3	Myb-like DNA-binding domain
`XP_057806064.1`	Pfam	`PF00072`	Response_reg	Domain	33	141	1e-24	87.6	Response regulator receiver domain
`XP_057806064.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	216	266	8.2e-09	36.2	Myb-like DNA-binding domain
`XP_057806065.1`	Pfam	`PF00072`	Response_reg	Domain	33	141	1e-24	87.6	Response regulator receiver domain
`XP_057806065.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	216	266	8.1e-09	36.2	Myb-like DNA-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XR_009100822.1
AAATTCCCAAAATCAAGAAGGAAAAAAAAGAGGAACTTCAATTCCTCAATCTCACAACACACAAACACATATAAAAGCAGCAAATTTCCTTAAGCTCGTCCTCTTCTCTCACTACTTCCCTTTATAAATAAACAAAATCCAATCTTGAAGAGACCCCTTTTATTTCCTCTTTATTCTATTATATGGGTGCTTTGAATTTTCAGTGACTGCATATGAATTATGTTAAAATAGCTCGAAACATGTGATTTTCAGCATATATC...

XR_009100823.1
GGAAAAAAAAGAGGAACTTCAATTCCTCAATCTCACAACACACAAACACATATAAAAGCAGCAAATTTCCTTAAGCTCGTCCTCTTCTCTCACTACTTCCCTTTATAAATAAACAAAATCCAATCTTGAAGAGACCCCTTTTATTTCCTCTTTATTCTATTATATGGGTGCTTTGAATTTTCAGTGACTGCATATGAATTATGTTAAAATAGCTCGAAACATGTGATTTTCAGCATATATCTTATGCGGGTTGTGTGAAT...

CDS

3 records

下载 CDS FASTA

LOC131021009
ATGAATCTTGGAGTCAATTCCATGTCTTTAACTACTTCAAGTGCTTCTTGGAAGTCCGGCGACGCAGTTTCCGACCAATTTCCGGCGGGGTTGAGAGTTCTCGTCGTCGACGATGACCCCACTTGTCTTAGGATCTTGGAAAAGATGCTGAGGAATTGCCGCTATGAAGTTACCAAATGCAGTCGAGCTGAGGTCGCGTTGAAGTTACTTAGGGATAACAAGGATGGATTCGACGTTGTTATTAGCGATGTCCACATGCC...

Protein

3 records

下载 Protein FASTA

XP_057806063.1
MNLGVNSMSLTTSSASWKSGDAVSDQFPAGLRVLVVDDDPTCLRILEKMLRNCRYEVTKCSRAEVALKLLRDNKDGFDVVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDSKSVVMKGVTHGACDYLIKPVRMEALKNIWQHVVRKKKYEWKEKDMEQSGSVEDGGERQQKPSDDADYSSSANEGNWRSSRKRKEEEDDGDDKDDSSTLKKPRVVWSVELHQQFVTAVNQLGIDKAVPKKILELMNVPGLTRENVAS...

XP_057806064.1
MNLGVNSMSLTTSSASWKSGDAVSDQFPAGLRVLVVDDDPTCLRILEKMLRNCRYEVTKCSRAEVALKLLRDNKDGFDVVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDSKSVVMKGVTHGACDYLIKPVRMEALKNIWQHVVRKKKYEWKEKDMEQSGSVEDGGERQQKPSDDADYSSSANEGNWRSSRKRKEEEDDGDDKDDSSTLKKPRVVWSVELHQQFVTAVNQLGIDKAVPKKILELMNVPGLTRENVAS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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