当前解析结果
SmilChr04G004150| 统一新 Gene ID | SmilChr04G004150 |
|---|---|
| 名称 | SmilChr04G004150 |
| 描述 | receptor-like protein kinase FERONIA |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 56213773 - 56216602 / - |
| NCBI Gene ID | LOC131021031 |
|---|---|
| GeneID | 131021031 |
| locus_tag | - |
| NCBI Name | LOC131021031 |
| 原始查询 | LOC131021031 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor-like protein kinase FERONIA |
| 产物 | receptor-like protein kinase FERONIA |
| Arabidopsis | AT3G04690 (ANX1)Malectin/receptor-like protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:819627] identity=50.4; qcov=1.05; evalue=0; confidence=high |
| Rice | Os05g0280700 (YK11)- identity=51.5; qcov=1; evalue=0; confidence=high |
| GO | GO:0004714 (transmembrane receptor protein tyrosine kinase activity); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0009506 (plasmodesma); GO:0046777 (protein autophosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF11721 (Malectin); PF12819 (Malectin_like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021031 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057806091.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057806091.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057806091.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057806091.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057806091.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:56213926 |
G |
A |
EMS_canonical_SNV | stop_gained | 18 | B117,B121,B56,B60,B70,B82,B90,B92,B96,C25,C38,C50,C64,C65,C66,C76,C80,D8 |
Chr4:56213971 |
G |
A |
EMS_canonical_SNV | stop_gained | 17 | B114,B119,B19,B24,B28,B42,B5,B61,B68,B69,C22,C24,C31,C75,C76,C84,D4 |
Chr4:56214008 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B115,B18,C21,C70,D10 |
Chr4:56214026 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B1,B40,B7,C8 |
Chr4:56214162 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B102,B137,C14 |
Chr4:56214230 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B45,B55 |
Chr4:56214263 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B81 |
Chr4:56214308 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A13,B94 |
Chr4:56214332 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A22 |
Chr4:56214743 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B98 |
Chr4:56214752 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B1,B40,B7 |
Chr4:56214830 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057806091.1PF12819
Malectin_like 29-379 aa
PF11721
Malectin 260-348 aa
PF00069
Pkinase 493-764 aa
PF07714
PK_Tyr_Ser-Thr 493-766 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806091.1 |
Pfam | PF12819 |
Malectin_like | Domain | 29 | 379 | 8.4e-29 | 101.6 | Malectin-like domain |
XP_057806091.1 |
Pfam | PF11721 |
Malectin | Domain | 260 | 348 | 9.5e-15 | 55.7 | Malectin domain |
XP_057806091.1 |
Pfam | PF00069 |
Pkinase | Domain | 493 | 764 | 1.8e-41 | 143.0 | Protein kinase domain |
XP_057806091.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 493 | 766 | 8.5e-50 | 170.2 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。