当前解析结果
SmilChr04G004169| 统一新 Gene ID | SmilChr04G004169 |
|---|---|
| 名称 | SmilChr04G004169 |
| 描述 | transcription factor MYB108 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 56328693 - 56330183 / - |
| NCBI Gene ID | LOC131021052 |
|---|---|
| GeneID | 131021052 |
| locus_tag | - |
| NCBI Name | LOC131021052 |
| 原始查询 | LOC131021052 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transcription factor MYB108 |
| 产物 | transcription factor MYB108 |
| Arabidopsis | AT5G49620 (MYB78)myb domain protein 78 [Source:NCBI gene (formerly Entrezgene);Acc:835024] identity=54.3; qcov=1.06; evalue=2.13e-90; confidence=high |
| Rice | Os07g0688200 (R2R3-MYB)- identity=84.6; qcov=0.542; evalue=1.43e-90; confidence=medium |
| GO | GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription); GO:0043565 (sequence-specific DNA binding) |
| KEGG | - |
| Pfam | PF00249 (Myb_DNA-binding); PF13921 (Myb_DNA-bind_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021052 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057806114.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057806114.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057806114.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057806114.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057806114.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:56329112 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr4:56329471 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C22,C25 |
Chr4:56329475 |
AG |
A |
1bp_deletion | frameshift_variant | 2 | C22,C25 |
Chr4:56329475 |
AG |
A |
1bp_deletion | CDS_variant | 2 | C22,C25 |
Chr4:56329478 |
TG |
T |
1bp_deletion | frameshift_variant | 2 | C22,C25 |
Chr4:56329478 |
TG |
T |
1bp_deletion | CDS_variant | 2 | C22,C25 |
Chr4:56329480 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C70 |
Chr4:56329483 |
C |
CCT |
2bp_insertion | frameshift_variant | 5 | B124,B53,C1,C22,C25 |
Chr4:56329483 |
C |
CCT |
2bp_insertion | CDS_variant | 5 | B124,B53,C1,C22,C25 |
Chr4:56329586 |
T |
TCG |
2bp_insertion | frameshift_variant | 17 | A2,A4,B133,B136,B4,B40,B49,B53,B55,C1,C13,C24,C25,C30,C36,C71,C74 |
Chr4:56329909 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B60 |
Chr4:56329909 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B60 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057806114.1PF00249
Myb_DNA-binding 20-67 aa
PF13921
Myb_DNA-bind_6 23-80 aa
PF00249
Myb_DNA-binding 73-116 aa
PF13921
Myb_DNA-bind_6 77-120 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806114.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 20 | 67 | 2.7e-35 | 121.0 | Myb-like DNA-binding domain |
XP_057806114.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 23 | 80 | 1.4e-21 | 77.1 | Myb-like DNA-binding domain |
XP_057806114.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 73 | 116 | 2.7e-35 | 121.0 | Myb-like DNA-binding domain |
XP_057806114.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 77 | 120 | 1.4e-21 | 77.1 | Myb-like DNA-binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。