Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G004170`

染色体: Chr04 坐标: 56343131-56349827 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G004170`
名称	SmilChr04G004170
描述	uncharacterized SmilChr04G004170
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	56343131 - 56349827 / `+`

ID 对照

NCBI Gene ID	`LOC131021054`
GeneID	`131021054`
locus_tag	`-`
NCBI Name	`LOC131021054`
原始查询	`LOC131021054`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	zinc knuckle (CCHC-type) family protein [Source:NCBI gene (formerly Entrezgene);Acc:835056]; symbol=emb1441; hit=AT5G49930; species=arabidopsis; confidence=high
产物	zinc knuckle (CCHC-type) family protein [Source:NCBI gene (formerly Entrezgene);Acc:835056]; symbol=emb1441; hit=AT5G49930; species=arabidopsis; confidence=high
Arabidopsis	`AT5G49930` (emb1441) zinc knuckle (CCHC-type) family protein [Source:NCBI gene (formerly Entrezgene);Acc:835056] identity=68.5; qcov=0.992; evalue=0; confidence=high
Rice	`Os12g0564600` (BIP117) - identity=63.4; qcov=1.04; evalue=0; confidence=high
GO	GO:0000049 (tRNA binding); GO:0008270 (zinc ion binding); GO:0043023 (ribosomal large subunit binding); GO:0072344 (rescue of stalled cytosolic ribosome); GO:1990112 (RQC complex); GO:1990116 (ribosome-associated ubiquitin-dependent protein catabolic process)
KEGG	-
Pfam	PF00098 (zf-CCHC); PF05670 (NFACT-R_1); PF05833 (NFACT_N); PF11923 (NFACT-C)
InterPro	-
eggNOG	-
NR	GeneID:131021054

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057806116.1`
2	Cytosol	细胞质基质	1.00000	`XP_057806116.1`
3	Nucleus	细胞核	0.60000	`XP_057806116.1`
4	Nucleoplasm	核质	0.20000	`XP_057806116.1`
5	Chromosome	染色体	0.00000	`XP_057806116.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:56343637`	`CA`	`C`	1bp_deletion	frameshift_variant	142	A1,A10,A11,A13,A14,A18,A19,A20,A21,A23,A25,A3,B1,B10,B100,B101,B102,B106,B107,B109,B111,B113,B114,B118,B120,B121,B122,B124,B125,B129,B13,B130,B132,B137,B138,B139,B140,B15,B16,B17,B2,B21,B24,B25,B26,B29,B3,B32,B33,B34,B38,B39,B40,B41,B44,B47,B48,B49,B50,B51,B53,B54,B55,B56,B58,B6,B60,B61,B63,B64,B68,B70,B71,B73,B74,B76,B78,B79,B8,B82,B83,B84,B85,B87,B88,B90,B91,B92,B93,B95,B96,B97,C12,C13,C14,C15,C16,C20,C21,C22,C26,C28,C29,C30,C31,C32,C35,C36,C38,C39,C40,C41,C45,C46,C49,C53,C56,C61,C65,C67,C68,C7,C70,C73,C76,C78,C79,C8,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D2,D6,D7
`Chr4:56344190`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B23
`Chr4:56344711`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B23
`Chr4:56344748`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B123,B50
`Chr4:56344760`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A24,B14
`Chr4:56345151`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:56345173`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C32
`Chr4:56345411`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A23,B44,B82,C12,C49
`Chr4:56345775`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A11,B5
`Chr4:56346270`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B80
`Chr4:56348030`	`AC`	`A`	1bp_deletion	frameshift_variant	121	A1,A10,A11,A13,A14,A18,A19,A20,A21,A23,A25,A3,B1,B10,B100,B101,B106,B107,B109,B111,B114,B118,B121,B124,B127,B129,B13,B132,B137,B139,B140,B15,B16,B17,B2,B24,B25,B26,B29,B3,B32,B33,B34,B38,B39,B40,B41,B44,B47,B48,B49,B50,B51,B53,B54,B56,B58,B6,B60,B61,B63,B64,B68,B70,B71,B73,B74,B76,B78,B79,B8,B83,B84,B85,B87,B88,B93,B95,B96,B97,C12,C13,C14,C15,C16,C20,C21,C22,C28,C29,C30,C31,C32,C35,C36,C38,C39,C40,C41,C45,C46,C53,C56,C61,C65,C67,C68,C7,C73,C78,C79,C81,C82,C83,C84,C9,D1,D10,D11,D2,D7
`Chr4:56348031`	`C`	`CT`	1bp_insertion	stop_gained,frameshift_variant	1	C70

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806116.1

1107 aa

554

1107

NFACT_N

NFACT-R_1

zf-CCHC

NFACT-C

PF05833 NFACT_N 15-183 aa PF05833 NFACT_N 230-544 aa PF05670 NFACT-R_1 554-665 aa PF00098 zf-CCHC 938-954 aa PF11923 NFACT-C 992-1085 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806116.1`	Pfam	`PF05833`	NFACT_N	Family	15	183	6.8e-27	95.1	NFACT N-terminal and middle domains
`XP_057806116.1`	Pfam	`PF05833`	NFACT_N	Family	230	544	6.8e-27	95.1	NFACT N-terminal and middle domains
`XP_057806116.1`	Pfam	`PF05670`	NFACT-R_1	Domain	554	665	1.5e-40	138.9	NFACT protein RNA binding domain
`XP_057806116.1`	Pfam	`PF00098`	zf-CCHC	Domain	938	954	1.4e-05	25.6	Zinc knuckle
`XP_057806116.1`	Pfam	`PF11923`	NFACT-C	Domain	992	1085	3.9e-29	101.4	NFACT protein C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057950133.1
GTTTCATTTTCCCCATTTGAAAGCTTCTCTATAATTCTGCAGCTGCTAATCCCACACTCTCAACTGATTTTACTTTTCATCATTGATTGAGTTTGATTCAAGTTTTAGAGGGACCGAAAACGTAATGGTGAAGGTACGGATGAACACCGCCGACGTGGCGGCGGAGGTGAAGTGTCTCCGGCACTTAATTGGTATGCGTTGCTCTAACGTATACGATCTTTCTCCCAAGACGTATGTGTTTAAGCTGATGAGTAGCAGTG...

CDS

1 records

下载 CDS FASTA

LOC131021054
ATGGTGAAGGTACGGATGAACACCGCCGACGTGGCGGCGGAGGTGAAGTGTCTCCGGCACTTAATTGGTATGCGTTGCTCTAACGTATACGATCTTTCTCCCAAGACGTATGTGTTTAAGCTGATGAGTAGCAGTGGAGTCACAGCCTCCGGGGAGAGTGAGAAGGTTTTGCTGTTGATGGAGAGTGGTGTAAGAATGCATACAACAGTTTATATGCGGGACAAGAGCAGTACTCCATCAGGGTTTACACTGAAACTAAG...

Protein

1 records

下载 Protein FASTA

XP_057806116.1
MVKVRMNTADVAAEVKCLRHLIGMRCSNVYDLSPKTYVFKLMSSSGVTASGESEKVLLLMESGVRMHTTVYMRDKSSTPSGFTLKLRKHIRTRRLEDVRQLGYDRIILFQFGLGANAHYVILELYAQGNIILTDTEFTVLTLLRSHRDDNKGLAIMSRHRYPVEQSRAFERTTRERMCAALESFVEGNKDQHLDSCETGNDSSNDPMGKHGSQKNTKANESKKADNIRAKQATLKVVLGEVLGYGPALSEHIILDAGLVP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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