Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G004176`

染色体: Chr04 坐标: 56362912-56365870 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G004176`
名称	SmilChr04G004176
描述	hydroxyproline O-galactosyltransferase GALT3-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	56362912 - 56365870 / `-`

ID 对照

NCBI Gene ID	`LOC131021058`
GeneID	`131021058`
locus_tag	`-`
NCBI Name	`LOC131021058`
原始查询	`LOC131021058`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hydroxyproline O-galactosyltransferase GALT3-like
产物	hydroxyproline O-galactosyltransferase GALT3-like
Arabidopsis	`AT3G06440` (AT3G06440) Galactosyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:819820] identity=47.8; qcov=1.01; evalue=0; confidence=high
Rice	`Os01g0328900` - identity=51.5; qcov=0.881; evalue=0; confidence=high
GO	GO:0000139 (Golgi membrane); GO:0006486 (GO:0006486); GO:0008378 (galactosyltransferase activity); GO:0030246 (carbohydrate binding)
KEGG	-
Pfam	PF00337 (Gal-bind_lectin); PF01762 (Galactosyl_T)
InterPro	-
eggNOG	-
NR	GeneID:131021058

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057806120.1`
2	Golgi stack	高尔基堆	0.20000	`XP_057806120.1`
3	Nucleus	细胞核	0.00000	`XP_057806120.1`
4	Chromosome	染色体	0.00000	`XP_057806120.1`
5	Centromere	着丝粒	0.00000	`XP_057806120.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:56363306`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B120,B130,B21,B64
`Chr4:56363312`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:56363346`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C53
`Chr4:56363611`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B76
`Chr4:56364020`	`AG`	`A`	1bp_deletion	frameshift_variant	17	B127,B130,B2,B40,B48,B50,B56,B6,B60,B67,B95,B96,C46,C67,C72,C78,D3
`Chr4:56364041`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B115,B123,B50,C16
`Chr4:56364188`	`C`	`CAT`	2bp_insertion	frameshift_variant	21	A18,A9,B109,B123,B131,B133,B16,B27,B37,B46,B53,B58,B68,B94,B99,C14,C29,C31,C37,C59,D8
`Chr4:56364201`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B115,B123,C16
`Chr4:56364228`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B120,B130,B21,B64
`Chr4:56364240`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A20,B91,C61,C86,D11
`Chr4:56364333`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A2,B42,B78,B94
`Chr4:56364704`	`A`	`AC`	1bp_insertion	frameshift_variant	67	A10,A14,A18,A20,A23,A24,A5,A6,A8,A9,B100,B102,B107,B109,B114,B125,B13,B131,B135,B14,B16,B21,B26,B35,B48,B53,B54,B55,B56,B57,B60,B63,B69,B73,B82,B87,B89,B90,B91,B92,B95,B96,C18,C19,C21,C22,C26,C30,C34,C37,C41,C46,C49,C5,C53,C58,C61,C73,C8,C85,C86,C87,D10,D11,D2,D5,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806120.1

639 aa

320

639

Gal-bind_lectin

Galactosyl_T

PF00337 Gal-bind_lectin 172-356 aa PF01762 Galactosyl_T 405-588 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806120.1`	Pfam	`PF00337`	Gal-bind_lectin	Domain	172	356	2e-22	79.8	Galactoside-binding lectin
`XP_057806120.1`	Pfam	`PF01762`	Galactosyl_T	Family	405	588	6.8e-38	131.1	Galactosyltransferase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057950137.1
TTTCCTATTAAAAAAAGAAGAAGAACCATGGCAAATAATATTAAAACTGACTAATTTGATCGCACGGACAAACACCAAGAATTTAGCTCAGAAGACAGATTTGCAATTACAGACACCCAAAATCAAAGACTTCACACTGTAGTTGGGTTCAAGATTCAATTTCGGATTATCGGCGTTATTTCGGTTTCTCAACCACTCTACCTGTGCTGCTGCTGAGGAGGGAGCAATTCCTTCTTTACCAAAGCTCAAGCTTTAAGCGG...

CDS

1 records

下载 CDS FASTA

LOC131021058
ATGAAGAAGTGGACTGGGGGCGTGCTCATAGTAGCCCTTGCTCTGATTTTGTTTCTCAGCTACACTTTGATTGGCAAATCTGAATCTTCCAAGAAACAGTCTGCATACGATTTTTTCAATCCACAGCCACCCAAAGAGGAAGATCCAGATCTCAATGCCAATGCCGATGCCAATGCCAATGGCGGCAGTGAGTCAAGTGAAACGCTGCACACAATCACTAGGCCTAAACCCCAGTTGAGATATCTTCAAGAATTGGAGGA...

Protein

1 records

下载 Protein FASTA

XP_057806120.1
MKKWTGGVLIVALALILFLSYTLIGKSESSKKQSAYDFFNPQPPKEEDPDLNANADANANGGSESSETLHTITRPKPQLRYLQELEDLYSLSKNLSREDPSALLAWGQMKFLFPRSDALPETDQGIKEALVMCRDLLVMVEEDKAAKLGNASMARSCPSFVSATLSKNESLLEIPCGLVEDSSVTVIGIPDTRQDSFQIELIGSPIEEGLKPPILLHYNVVLPGENLTKEPVLVQNSWIQESGWGKPERCPDHAPPRPLQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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