当前解析结果
SmilChr04G004175| 统一新 Gene ID | SmilChr04G004175 |
|---|---|
| 名称 | SmilChr04G004175 |
| 描述 | leghemoglobin reductase-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 56360741 - 56362775 / - |
| NCBI Gene ID | LOC131021059 |
|---|---|
| GeneID | 131021059 |
| locus_tag | - |
| NCBI Name | LOC131021059 |
| 原始查询 | LOC131021059 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | leghemoglobin reductase-like |
| 产物 | leghemoglobin reductase-like |
| Arabidopsis | AT1G48030 (mtLPD1)mitochondrial lipoamide dehydrogenase 1 [Source:NCBI gene (formerly Entrezgene);Acc:841221] identity=80.7; qcov=1.03; evalue=0; confidence=high |
| Rice | Os01g0328700- identity=76.7; qcov=1.02; evalue=0; confidence=high |
| GO | GO:0004148 (dihydrolipoyl dehydrogenase (NADH) activity); GO:0005739 (mitochondrion); GO:0045252 (oxoglutarate dehydrogenase complex); GO:0050660 (flavin adenine dinucleotide binding) |
| KEGG | smil00010 (Glycolysis / Gluconeogenesis - Salvia miltiorrhiza (redroot sage)); smil00020 (Citrate cycle (TCA cycle) - Salvia miltiorrhiza (redroot sage)); smil00260 (Glycine, serine and threonine metabolism - Salvia miltiorrhiza (redroot sage)); smil00280 (Valine, leucine and isoleucine degradation - Salvia miltiorrhiza (redroot sage)); smil00310 (Lysine degradation - Salvia miltiorrhiza (redroot sage)); smil00380 (Tryptophan metabolism - Salvia miltiorrhiza (redroot sage)); smil00620 (Pyruvate metabolism - Salvia miltiorrhiza (redroot sage)); smil00630 (Glyoxylate and dicarboxylate metabolism - Salvia miltiorrhiza (redroot sage)); smil00640 (Propanoate metabolism - Salvia miltiorrhiza (redroot sage)); smil00670 (One carbon pool by folate - Salvia miltiorrhiza (redroot sage)); smil00785 (Lipoic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01210 (2-Oxocarboxylic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00070 (Pyr_redox); PF00890 (FAD_binding_2); PF01134 (GIDA); PF02852 (Pyr_redox_dim); PF07992 (Pyr_redox_2); PF12831 (FAD_oxidored); PF13450 (NAD_binding_8); PF13738 (Pyr_redox_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021059 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057806121.1 |
| 2 | Mitochondrion matrix | 线粒体基质 | 1.00000 | XP_057806121.1 |
| 3 | Mitochondrion intermembrane space | Mitochondrion intermembrane space | 0.20000 | XP_057806121.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057806121.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057806121.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:56361049 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C15 |
Chr4:56361049 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr4:56361261 |
CA |
C |
1bp_deletion | frameshift_variant | 73 | A1,A13,A14,A21,A3,A7,B1,B10,B113,B12,B120,B121,B124,B125,B127,B132,B137,B138,B139,B15,B22,B25,B34,B37,B46,B47,B52,B57,B61,B65,B67,B68,B70,B75,B76,B78,B84,B85,B87,B88,B90,B92,B97,C12,C13,C14,C15,C19,C2,C22,C28,C29,C30,C35,C36,C38,C39,C40,C45,C46,C61,C63,C7,C73,C74,C76,C78,C79,C82,C87,D1,D10,D11 |
Chr4:56361366 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B27,B33,B51,C51,D5 |
Chr4:56361368 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:56361388 |
TAC |
T |
2bp_deletion | frameshift_variant | 4 | B120,B130,B21,B64 |
Chr4:56361388 |
TAC |
T |
2bp_deletion | CDS_variant | 4 | B120,B130,B21,B64 |
Chr4:56361441 |
CTT |
C |
2bp_deletion | frameshift_variant | 18 | A8,B10,B105,B131,B135,B2,B28,B30,B59,B60,B67,B89,B94,C19,C30,C34,C37,C42 |
Chr4:56361973 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A24,B14 |
Chr4:56361995 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | B104 |
Chr4:56361995 |
CT |
C |
1bp_deletion | CDS_variant | 1 | B104 |
Chr4:56362062 |
CA |
C |
1bp_deletion | frameshift_variant | 14 | B114,B135,B138,B16,B20,B24,B69,B96,B98,C27,C43,C58,D4,D5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057806121.1PF00890
FAD_binding_2 39-75 aa
PF12831
FAD_oxidored 39-83 aa
PF01134
GIDA 39-180 aa
PF07992
Pyr_redox_2 39-363 aa
PF13450
NAD_binding_8 42-78 aa
PF13738
Pyr_redox_3 167-347 aa
PF00070
Pyr_redox 210-283 aa
PF02852
Pyr_redox_dim 387-484 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806121.1 |
Pfam | PF00890 |
FAD_binding_2 | Domain | 39 | 75 | 3.4e-08 | 33.8 | FAD binding domain |
XP_057806121.1 |
Pfam | PF12831 |
FAD_oxidored | Family | 39 | 83 | 3.4e-10 | 40.5 | FAD dependent oxidoreductase |
XP_057806121.1 |
Pfam | PF01134 |
GIDA | Family | 39 | 180 | 2.1e-10 | 40.9 | Glucose inhibited division protein A |
XP_057806121.1 |
Pfam | PF07992 |
Pyr_redox_2 | Domain | 39 | 363 | 1.6e-72 | 245.1 | Pyridine nucleotide-disulphide oxidoreductase |
XP_057806121.1 |
Pfam | PF13450 |
NAD_binding_8 | Domain | 42 | 78 | 2.4e-07 | 31.7 | NAD(P)-binding Rossmann-like domain |
XP_057806121.1 |
Pfam | PF13738 |
Pyr_redox_3 | Family | 167 | 347 | 7.9e-12 | 45.8 | Pyridine nucleotide-disulphide oxidoreductase |
XP_057806121.1 |
Pfam | PF00070 |
Pyr_redox | Domain | 210 | 283 | 1.7e-25 | 90.0 | Pyridine nucleotide-disulphide oxidoreductase |
XP_057806121.1 |
Pfam | PF02852 |
Pyr_redox_dim | Domain | 387 | 484 | 8.4e-31 | 107.1 | Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。