当前解析结果
SmilChr04G004178| 统一新 Gene ID | SmilChr04G004178 |
|---|---|
| 名称 | SmilChr04G004178 |
| 描述 | inositol transporter 4-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 56374652 - 56376856 / - |
| NCBI Gene ID | LOC131021064 |
|---|---|
| GeneID | 131021064 |
| locus_tag | - |
| NCBI Name | LOC131021064 |
| 原始查询 | LOC131021064 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | inositol transporter 4-like |
| 产物 | inositol transporter 4-like |
| Arabidopsis | AT4G16480 (INT4)inositol transporter 4 [Source:NCBI gene (formerly Entrezgene);Acc:827346] identity=70.6; qcov=1.01; evalue=0; confidence=high |
| Rice | Os04g0511400- identity=63.2; qcov=0.991; evalue=0; confidence=high |
| GO | GO:0005366 (myo-inositol:proton symporter activity); GO:0016020 (membrane); GO:0055085 (transmembrane transport) |
| KEGG | - |
| Pfam | PF00083 (Sugar_tr); PF06609 (TRI12); PF07690 (MFS_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021064 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057806126.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057806126.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057806126.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057806126.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057806126.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:56374860 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr4:56375237 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A7,B10,B67,B80,C42 |
Chr4:56375437 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B83 |
Chr4:56375514 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr4:56375619 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B27,B51,C51 |
Chr4:56375622 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C75 |
Chr4:56375761 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B120 |
Chr4:56375762 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr4:56376502 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A18,B109,B122,B124,C35 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057806126.1PF00083
Sugar_tr 32-367 aa
PF07690
MFS_1 37-366 aa
PF06609
TRI12 85-231 aa
PF00083
Sugar_tr 452-557 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806126.1 |
Pfam | PF00083 |
Sugar_tr | Family | 32 | 367 | 2.7e-119 | 399.7 | Sugar (and other) transporter |
XP_057806126.1 |
Pfam | PF07690 |
MFS_1 | Family | 37 | 366 | 3.5e-36 | 125.6 | Major Facilitator Superfamily |
XP_057806126.1 |
Pfam | PF06609 |
TRI12 | Family | 85 | 231 | 4.7e-07 | 29.4 | Fungal trichothecene efflux pump (TRI12) |
XP_057806126.1 |
Pfam | PF00083 |
Sugar_tr | Family | 452 | 557 | 2.7e-119 | 399.7 | Sugar (and other) transporter |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。