当前解析结果
SmilChr04G000017| 统一新 Gene ID | SmilChr04G000017 |
|---|---|
| 名称 | SmilChr04G000017 |
| 描述 | secreted RxLR effector protein 161-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 225231 - 226010 / + |
| NCBI Gene ID | LOC131021095 |
|---|---|
| GeneID | 131021095 |
| locus_tag | - |
| NCBI Name | LOC131021095 |
| 原始查询 | LOC131021095 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | secreted RxLR effector protein 161-like |
| 产物 | secreted RxLR effector protein 161-like |
| Arabidopsis | AT4G23160 (CRK8)cysteine-rich RECEPTOR-like kinase [Source:NCBI gene (formerly Entrezgene);Acc:828415] identity=32.2; qcov=0.738; evalue=1.11e-23; confidence=low |
| Rice | Os08g0125300- identity=40.6; qcov=0.869; evalue=2.42e-40; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021095 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057806168.1 |
| 2 | Nucleus | 细胞核 | 0.20000 | XP_057806168.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057806168.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057806168.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057806168.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:225308 |
TA |
T |
1bp_deletion | frameshift_variant | 1 | C72 |
Chr4:225308 |
TA |
T |
1bp_deletion | CDS_variant | 1 | C72 |
Chr4:225318 |
A |
AAG |
2bp_insertion | frameshift_variant | 40 | A19,A24,A4,A9,B10,B110,B125,B128,B140,B19,B20,B24,B33,B35,B45,B61,B71,B73,B79,B9,B91,B92,B98,C26,C3,C30,C34,C36,C48,C50,C57,C60,C61,C7,C72,C84,C87,D11,D5,D8 |
Chr4:225321 |
GAT |
G |
2bp_deletion | frameshift_variant | 40 | A19,A24,A4,A9,B10,B110,B125,B128,B140,B19,B20,B24,B33,B35,B45,B61,B71,B73,B79,B9,B91,B92,B98,C26,C3,C30,C34,C36,C48,C50,C57,C60,C61,C7,C72,C84,C87,D11,D5,D8 |
Chr4:225348 |
T |
TC |
1bp_insertion | frameshift_variant | 35 | A24,A4,A9,B10,B110,B125,B128,B140,B19,B20,B24,B33,B35,B45,B71,B73,B79,B9,B91,B92,B98,C26,C3,C30,C34,C36,C48,C50,C57,C61,C7,C87,D11,D5,D8 |
Chr4:225379 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:225390 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr4:225396 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr4:225440 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | C21,C32,C55,C68,C73 |
Chr4:225475 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C48,C50 |
Chr4:225479 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
Chr4:225495 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B24,C85,D10 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。