当前解析结果
SmilChr04G000052| 统一新 Gene ID | SmilChr04G000052 |
|---|---|
| 名称 | SmilChr04G000052 |
| 描述 | PKS-NRPS hybrid synthetase cheA-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 462345 - 464873 / + |
| NCBI Gene ID | LOC131021097 |
|---|---|
| GeneID | 131021097 |
| locus_tag | - |
| NCBI Name | LOC131021097 |
| 原始查询 | LOC131021097 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | PKS-NRPS hybrid synthetase cheA-like |
| 产物 | PKS-NRPS hybrid synthetase cheA-like |
| Arabidopsis | AT4G38180 (FRS5)FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974] identity=23.3; qcov=0.339; evalue=1.65e-14; confidence=weak |
| Rice | Os01g0852650- identity=24.6; qcov=0.45; evalue=1.32e-20; confidence=weak |
| GO | GO:0006355 (regulation of DNA-templated transcription) |
| KEGG | - |
| Pfam | PF00872 (Transposase_mut); PF10551 (MULE); PF21056 (ZSWIM1-3_RNaseH-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021097 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057806170.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057806170.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057806170.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057806170.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057806170.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:462350 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B55,C31,D11 |
Chr4:462375 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B55,C31,D11 |
Chr4:462382 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A11,B112,B22,B98,C6 |
Chr4:462414 |
CA |
* |
1bp_deletion | CDS_variant | 2 | C35,C74 |
Chr4:462447 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:462464 |
T |
TAA |
2bp_insertion | frameshift_variant | 29 | A13,A23,B114,B122,B137,B138,B26,B32,B41,B46,B53,B61,B64,B71,B80,B89,C19,C20,C30,C33,C53,C60,C61,C81,C82,C9,D3,D4,D5 |
Chr4:462465 |
G |
GT |
1bp_insertion | frameshift_variant | 29 | A13,A23,B114,B122,B137,B138,B26,B32,B41,B46,B53,B61,B64,B71,B80,B89,C19,C20,C30,C33,C53,C60,C61,C81,C82,C9,D3,D4,D5 |
Chr4:462486 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A19,C74 |
Chr4:462515 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B50,C10 |
Chr4:462569 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B55,C31 |
Chr4:462603 |
G |
GA |
1bp_insertion | frameshift_variant | 1 | B104 |
Chr4:462603 |
G |
GA |
1bp_insertion | CDS_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057806170.1PF21056
ZSWIM1-3_RNaseH-like 153-248 aa
PF10551
MULE 162-257 aa
PF00872
Transposase_mut 199-352 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806170.1 |
Pfam | PF21056 |
ZSWIM1-3_RNaseH-like | Domain | 153 | 248 | 5.1e-13 | 49.8 | Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain |
XP_057806170.1 |
Pfam | PF10551 |
MULE | Domain | 162 | 257 | 2.3e-25 | 89.5 | MULE transposase domain |
XP_057806170.1 |
Pfam | PF00872 |
Transposase_mut | Family | 199 | 352 | 1.1e-05 | 25.2 | Transposase, Mutator family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。