Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G001836

染色体: Chr01 坐标: 33293736-33296848 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G001836
名称SmilChr01G001836
描述uncharacterized SmilChr01G001836
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向33293736 - 33296848 / +

ID 对照

NCBI Gene IDLOC131021124
GeneID131021124
locus_tag-
NCBI NameLOC131021124
原始查询LOC131021124

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817305]; symbol=AT2G27590; hit=AT2G27590; species=arabidopsis; confidence=high
产物S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817305]; symbol=AT2G27590; hit=AT2G27590; species=arabidopsis; confidence=high
ArabidopsisAT2G27590 (AT2G27590)
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817305]
identity=69.4; qcov=0.824; evalue=1.07e-170; confidence=high
RiceOs01g0858700
-
identity=59; qcov=0.893; evalue=4.99e-153; confidence=high
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131021124

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057806199.1
2 Nucleoplasm 核质 1.00000 XP_057806199.1
3 Cytoplasm 细胞质 0.80000 XP_057806199.1
4 Cytosol 细胞质基质 0.60000 XP_057806199.1
5 Nucleolus 核仁 0.40000 XP_057806199.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:33293864 C T EMS_canonical_SNV CDS_variant 2 B133,B28
Chr1:33293949 G A EMS_canonical_SNV CDS_variant 1 B61
Chr1:33293976 C T EMS_canonical_SNV stop_gained 8 B107,B126,B2,B34,B94,C24,C37,C8
Chr1:33294016 C T EMS_canonical_SNV CDS_variant 4 A6,B100,C22,C32
Chr1:33294028 C T EMS_canonical_SNV CDS_variant 1 B140
Chr1:33294038 C T EMS_canonical_SNV CDS_variant 3 B14,D1,D4
Chr1:33294205 G A EMS_canonical_SNV CDS_variant 2 B109,C79
Chr1:33294225 G A EMS_canonical_SNV CDS_variant 3 B14,B30,C54
Chr1:33294246 G A EMS_canonical_SNV CDS_variant 3 B19,B33,D8
Chr1:33294253 AG A 1bp_deletion frameshift_variant 2 B133,B14
Chr1:33294253 AG A 1bp_deletion CDS_variant 2 B133,B14
Chr1:33294257 C T EMS_canonical_SNV CDS_variant 2 B78,C58

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057950216.1
CTTACCAAAGCGGCAAAGCCTAAACTGATAGAGTGGAAACTAACTCGGAAGTATAAAATCAGTCCGAGCTGCCCACCGCCGCCTCTCCAACCGGAAATGGGAAAACACGGCAAGAAGCAAAGCCTCAACCACCGCCGAGGAAAAAAATCATCCTACGCTCTTCAAGACAACGAAGAAGAAGAGACTAATGGTTACCCGTTAAACCCTTCTTCCGCTCTCTCCGATTCCGACCAAGAATCGCAGGAAGAAGATGAAGAAAA...

CDS

1 records

下载 CDS FASTA
LOC131021124
ATGGGAAAACACGGCAAGAAGCAAAGCCTCAACCACCGCCGAGGAAAAAAATCATCCTACGCTCTTCAAGACAACGAAGAAGAAGAGACTAATGGTTACCCGTTAAACCCTTCTTCCGCTCTCTCCGATTCCGACCAAGAATCGCAGGAAGAAGATGAAGAAAATCAAGAAAAAGATAAGGGTTCCGAGACTAGTGCAGGAATCGACAGTGGGCTACCCTCAAAATTCTCTCTTTATCAACAGTCCGTGCAGTCGCCAAA...

Protein

1 records

下载 Protein FASTA
XP_057806199.1
MGKHGKKQSLNHRRGKKSSYALQDNEEEETNGYPLNPSSALSDSDQESQEEDEENQEKDKGSETSAGIDSGLPSKFSLYQQSVQSPKGDISYLQKFFLMYVGGRAPLHLQEDFCGTALLSVEWLHGDARRTAIGLDLDVEALNWCLENNVNRIGPDVCSRISLLHGNVLQPLESKLVNFSPDEILQKMTLEDDEGDSMDGTTSSGVQDSAEAGQNANSLNDVQLPPRDIVCAFNYSCCCLHNRKELILYFKHALNTLSRK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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