当前解析结果
SmilChr04G000365| 统一新 Gene ID | SmilChr04G000365 |
|---|---|
| 名称 | SmilChr04G000365 |
| 描述 | uncharacterized SmilChr04G000365 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 3673340 - 3674452 / + |
| NCBI Gene ID | LOC131021159 |
|---|---|
| GeneID | 131021159 |
| locus_tag | - |
| NCBI Name | LOC131021159 |
| 原始查询 | LOC131021159 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Leucine-rich repeat (LRR) family protein [Source:NCBI gene (formerly Entrezgene);Acc:841373]; symbol=AT1G49490; hit=AT1G49490; species=arabidopsis; confidence=low |
| 产物 | Leucine-rich repeat (LRR) family protein [Source:NCBI gene (formerly Entrezgene);Acc:841373]; symbol=AT1G49490; hit=AT1G49490; species=arabidopsis; confidence=low |
| Arabidopsis | AT1G49490 (AT1G49490)Leucine-rich repeat (LRR) family protein [Source:NCBI gene (formerly Entrezgene);Acc:841373] identity=38.6; qcov=0.447; evalue=6.81e-09; confidence=low |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021159 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 0.60000 | XP_057806232.1 |
| 2 | Cell wall | 细胞壁 | 0.40000 | XP_057806232.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057806232.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057806232.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057806232.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:3673500 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr4:3673616 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B121,C39,C75 |
Chr4:3673692 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C31 |
Chr4:3673745 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B7 |
Chr4:3673847 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C21 |
Chr4:3673860 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C55 |
Chr4:3673885 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B105 |
Chr4:3673943 |
A |
ATG |
2bp_insertion | frameshift_variant | 11 | B106,B16,B41,B75,C25,C3,C36,C39,C56,C59,D9 |
Chr4:3673944 |
CAG |
C |
2bp_deletion | frameshift_variant | 11 | B106,B16,B41,B75,C25,C3,C36,C39,C56,C59,D9 |
Chr4:3673963 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B63 |
Chr4:3674038 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C39 |
Chr4:3674104 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B59 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。