Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002013`

染色体: Chr04 坐标: 32671486-32673946 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002013`
名称	SmilChr04G002013
描述	zinc finger BED domain-containing protein RICESLEEPER 2-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	32671486 - 32673946 / `-`

ID 对照

NCBI Gene ID	`LOC131021184`
GeneID	`131021184`
locus_tag	`-`
NCBI Name	`LOC131021184`
原始查询	`LOC131021184`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	zinc finger BED domain-containing protein RICESLEEPER 2-like
产物	zinc finger BED domain-containing protein RICESLEEPER 2-like
Arabidopsis	`AT3G42170` (DAYSLEEPER) BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER [Source:NCBI gene (formerly Entrezgene);Acc:3769417] identity=31.4; qcov=0.877; evalue=1.73e-26; confidence=low
Rice	`Os05g0583100` - identity=34.6; qcov=0.894; evalue=2.18e-34; confidence=low
GO	GO:0003677 (DNA binding); GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF05699 (Dimer_Tnp_hAT); PF14372 (hAT-like_RNase-H)
InterPro	-
eggNOG	-
NR	GeneID:131021184

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057806258.1`
2	Chromosome	染色体	0.00000	`XP_057806258.1`
3	Centromere	着丝粒	0.00000	`XP_057806258.1`
4	Chromatin	染色质	0.00000	`XP_057806258.1`
5	Telomere	端粒	0.00000	`XP_057806258.1`

进入亚细胞定位查询

EMS 诱变突变

该基因暂未检索到已上线的精选 EMS CDS / LoF 突变，或 EMS 突变库仍在构建。

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806258.1

236 aa

118

236

hAT-like_RNase-H

Dimer_Tnp_hAT

PF14372 hAT-like_RNase-H 1-69 aa PF05699 Dimer_Tnp_hAT 131-214 aa

XP_057806259.1

236 aa

118

236

hAT-like_RNase-H

Dimer_Tnp_hAT

PF14372 hAT-like_RNase-H 1-69 aa PF05699 Dimer_Tnp_hAT 131-214 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806258.1`	Pfam	`PF14372`	hAT-like_RNase-H	Domain	1	69	5e-18	65.8	hAT-like transposase, RNase-H fold
`XP_057806258.1`	Pfam	`PF05699`	Dimer_Tnp_hAT	Domain	131	214	2.6e-29	101.5	hAT family C-terminal dimerisation region
`XP_057806259.1`	Pfam	`PF14372`	hAT-like_RNase-H	Domain	1	69	5e-18	65.8	hAT-like transposase, RNase-H fold
`XP_057806259.1`	Pfam	`PF05699`	Dimer_Tnp_hAT	Domain	131	214	2.6e-29	101.5	hAT family C-terminal dimerisation region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057950275.1
TCCATGTAAATCAACTAGATCCGAACCATGAGGTTGGGACAGAGATTAGAGAGGAGAATCAAGACAATCCCTACATGACAAAGAAAAGAAAACGCACGTCCAAAGTGTGGGATGACTTCAAAGAGATCATTGATGTAAAAGGAAATGTGAAAGCCGAATGCATTCATTGCAAGACACGGCTATCAGTCAACAAGACTGGTTGTACAACTCACTTGGCTAGACATAGTGCCAAATGCACTGCTAAACAAATTCACAGCACG...

XM_057950276.1
TTGTTTGTTCTTTCCTTGAAGATTTTCATGAGATCACTGAACTCATCTCAGGTATTAATATATTTACTTTGCACTCATAATATATTGTGTAATTACTAATGTCAATTATATCATCACATTTAATGCAGGTTCTGAGTACCCGACAGCCAATCTTTTCTTGGTCAAACTTGTTCACATAAAGTCACTATTGACTTATGAGAGTTTAGATAAAGATTCAGGTACCACAGCTACATTTATGGAAAAAATGCTTGAAAAGATGA...

CDS

2 records

下载 CDS FASTA

LOC131021184
ATGGAAAAAATGCTTGAAAAGATGAAGTTGAAGTTTGATAAGTATTGGGGATCTTGTAATTTATTGATTTCTATAGCGGCTGTTTTAGATCCTAGAAACAAAATGAAGTATATTGAGTGGTGTGCTGACAATTGCTATTCTGGCGTGGAAGGGATTGAACTTAAAGTAACAGTTTTTGAGACATTGCGAAACTTGTATGCTGAATATGTAGAGGCTTATAGAGTTAGTACTAGTACTACTAATATTGTGAGAAATGCTAG...

Protein

2 records

下载 Protein FASTA

XP_057806258.1
MEKMLEKMKLKFDKYWGSCNLLISIAAVLDPRNKMKYIEWCADNCYSGVEGIELKVTVFETLRNLYAEYVEAYRVSTSTTNIVRNASDAQTGSSSNVSGVSSVKSSTSRSQSKYESFRKTVTSVDQMKSDFDLYFEEAVEEWNEPTQFDAIGWWKMHRMKYKILSKMACDVLSIPITTVASESAFSAGGRVIDPHRASLGVDTVQMLLCAEDWLRARYEIKGKAQDKENTKEITFT

XP_057806259.1
MEKMLEKMKLKFDKYWGSCNLLISIAAVLDPRNKMKYIEWCADNCYSGVEGIELKVTVFETLRNLYAEYVEAYRVSTSTTNIVRNASDAQTGSSSNVSGVSSVKSSTSRSQSKYESFRKTVTSVDQMKSDFDLYFEEAVEEWNEPTQFDAIGWWKMHRMKYKILSKMACDVLSIPITTVASESAFSAGGRVIDPHRASLGVDTVQMLLCAEDWLRARYEIKGKAQDKENTKEITFT

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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