Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002017`

染色体: Chr04 坐标: 32717587-32721734 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002017`
名称	SmilChr04G002017
描述	aldehyde dehydrogenase family 2 member B4, mitochondrial
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	32717587 - 32721734 / `-`

ID 对照

NCBI Gene ID	`LOC131021187`
GeneID	`131021187`
locus_tag	`-`
NCBI Name	`LOC131021187`
原始查询	`LOC131021187`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	aldehyde dehydrogenase family 2 member B4, mitochondrial
产物	aldehyde dehydrogenase family 2 member B4%2C mitochondrial
Arabidopsis	`AT3G48000` (ALDH2B4) aldehyde dehydrogenase 2B4 [Source:NCBI gene (formerly Entrezgene);Acc:823955] identity=80.9; qcov=1; evalue=0; confidence=high
Rice	`Os06g0270900` (OsALDH2B1) - identity=80.6; qcov=0.94; evalue=0; confidence=high
GO	GO:0004029 (aldehyde dehydrogenase (NAD+) activity)
KEGG	smil00010 (Glycolysis / Gluconeogenesis - Salvia miltiorrhiza (redroot sage)); smil00053 (Ascorbate and aldarate metabolism - Salvia miltiorrhiza (redroot sage)); smil00071 (Fatty acid degradation - Salvia miltiorrhiza (redroot sage)); smil00280 (Valine, leucine and isoleucine degradation - Salvia miltiorrhiza (redroot sage)); smil00310 (Lysine degradation - Salvia miltiorrhiza (redroot sage)); smil00330 (Arginine and proline metabolism - Salvia miltiorrhiza (redroot sage)); smil00340 (Histidine metabolism - Salvia miltiorrhiza (redroot sage)); smil00380 (Tryptophan metabolism - Salvia miltiorrhiza (redroot sage)); smil00410 (beta-Alanine metabolism - Salvia miltiorrhiza (redroot sage)); smil00561 (Glycerolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00620 (Pyruvate metabolism - Salvia miltiorrhiza (redroot sage)); smil00770 (Pantothenate and CoA biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF00171 (Aldedh)
InterPro	-
eggNOG	-
NR	GeneID:131021187

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057806263.1`
2	Mitochondrion matrix	线粒体基质	1.00000	`XP_057806263.1`
3	Nucleus	细胞核	0.00000	`XP_057806263.1`
4	Chromosome	染色体	0.00000	`XP_057806263.1`
5	Centromere	着丝粒	0.00000	`XP_057806263.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:32717715`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B63
`Chr4:32717740`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B63
`Chr4:32717806`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B51,C46
`Chr4:32717929`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B88
`Chr4:32718418`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr4:32718427`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A24,B7,C42
`Chr4:32719316`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr4:32719331`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr4:32720899`	`AGC`	`A`	2bp_deletion	frameshift_variant	1	B41
`Chr4:32720899`	`AGC`	`A`	2bp_deletion	CDS_variant	1	B41
`Chr4:32721360`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806263.1

537 aa

268

537

Aldedh

PF00171 Aldedh 65-527 aa

XP_057806264.1

537 aa

268

537

Aldedh

PF00171 Aldedh 65-527 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806263.1`	Pfam	`PF00171`	Aldedh	Family	65	527	3e-181	603.7	Aldehyde dehydrogenase family
`XP_057806264.1`	Pfam	`PF00171`	Aldedh	Family	65	527	3e-181	603.7	Aldehyde dehydrogenase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057950280.1
ACCAGAGTGGATTCTGGAGAAAAGGCTGTGTTTGCTTCATTTCTCTATTGCTGTAGATATATATCAAAACACTAAATTTATTTTACGTATATATATATAGAGGAATGGATTTAGACGTCATATGATATAAAAGGTTTGCACCGAGAAATTAAGTGAGTTCAGAAAAGGGGAAGTGGGAAGAGATAGATACATGGCAGCTCGCAGAATCTCCACCATGCTCTCTCGCTCTCTCTCTCTCTCCTCCGCTGCTACTTCACTTG...

XM_057950281.1
ACCAGAGTGGATTCTGGAGAAAAGGCTGTGTTTGCTTCATTTCTCTATTGCTGTAGATATATATCAAAACACTAAATTTATTTTACGTATATATATATAGAGGAATGGATTTAGACGTCATATGATATAAAAGGTGGTTTGCACCGAGAAATTAAGTGAGTTCAGAAAAGGGGAAGTGGGAAGAGATAGATACATGGCAGCTCGCAGAATCTCCACCATGCTCTCTCGCTCTCTCTCTCTCTCCTCCGCTGCTACTTCAC...

CDS

2 records

下载 CDS FASTA

LOC131021187
ATGGCAGCTCGCAGAATCTCCACCATGCTCTCTCGCTCTCTCTCTCTCTCCTCCGCTGCTACTTCACTTGGCAGAAAATATGGATTGGGAAGGGGAATGCAAAGATTTAGTACTGGCACTGCTGCAGTTCTTGAGGAACCAATAACCCCTCCTGTTGAAATTAATTACACCAAGCTTCTCATCAATGGCCAATTTGTGGATTCAGCATCTGGAAAAACATTTCCCACCTTGGATCCCCGGACCGGAGAAGTCATTGCCCA...

Protein

2 records

下载 Protein FASTA

XP_057806263.1
MAARRISTMLSRSLSLSSAATSLGRKYGLGRGMQRFSTGTAAVLEEPITPPVEINYTKLLINGQFVDSASGKTFPTLDPRTGEVIAHVAEGDKEDINRAVSAARKAFDEGPWPKMSAYERSRIILRFADLVEKNMKELAQLETWDNGKPFQQALTAEVPMFVRLFHYYAGWADKIHGLTVPADGPHHVQVLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLTALYVAKLFHEAGLPDGVLNIVSGY...

XP_057806264.1
MAARRISTMLSRSLSLSSAATSLGRKYGLGRGMQRFSTGTAAVLEEPITPPVEINYTKLLINGQFVDSASGKTFPTLDPRTGEVIAHVAEGDKEDINRAVSAARKAFDEGPWPKMSAYERSRIILRFADLVEKNMKELAQLETWDNGKPFQQALTAEVPMFVRLFHYYAGWADKIHGLTVPADGPHHVQVLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLTALYVAKLFHEAGLPDGVLNIVSGY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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