Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002058`

染色体: Chr04 坐标: 33315937-33320180 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002058`
名称	SmilChr04G002058
描述	uncharacterized SmilChr04G002058
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	33315937 - 33320180 / `+`

ID 对照

NCBI Gene ID	`LOC131021226`
GeneID	`131021226`
locus_tag	`-`
NCBI Name	`LOC131021226`
原始查询	`LOC131021226`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ADP-glucose pyrophosphorylase family protein [Source:NCBI gene (formerly Entrezgene);Acc:843830]; symbol=AT1G74910; hit=AT1G74910; species=arabidopsis; confidence=high
产物	ADP-glucose pyrophosphorylase family protein [Source:NCBI gene (formerly Entrezgene);Acc:843830]; symbol=AT1G74910; hit=AT1G74910; species=arabidopsis; confidence=high
Arabidopsis	`AT1G74910` (AT1G74910) ADP-glucose pyrophosphorylase family protein [Source:NCBI gene (formerly Entrezgene);Acc:843830] identity=83.9; qcov=1; evalue=0; confidence=high
Rice	`Os03g0208900` (OsMPG2) - identity=80.5; qcov=1; evalue=0; confidence=high
GO	GO:0005737 (cytoplasm); GO:0009058 (biosynthetic process)
KEGG	smil00051 (Fructose and mannose metabolism - Salvia miltiorrhiza (redroot sage)); smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil00541 (Biosynthesis of various nucleotide sugars - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage)); smil01250 (Biosynthesis of nucleotide sugars - Salvia miltiorrhiza (redroot sage))
Pfam	PF00483 (NTP_transferase); PF25087 (GMPPB_C)
InterPro	-
eggNOG	-
NR	GeneID:131021226

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057806317.1`
2	Cytosol	细胞质基质	0.60000	`XP_057806317.1`
3	Peroxisome	过氧化物酶体	0.20000	`XP_057806317.1`
4	Nucleus	细胞核	0.00000	`XP_057806317.1`
5	Chromosome	染色体	0.00000	`XP_057806317.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:33316280`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B22,C57,C77
`Chr4:33316836`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr4:33317119`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A22,B76,C49
`Chr4:33318000`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr4:33318708`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A24,B7,C42
`Chr4:33318964`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C73
`Chr4:33319054`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B12,B122,D10
`Chr4:33319080`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr4:33319081`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B12,B122,B55,D10
`Chr4:33319082`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B12,B122,B55,D10
`Chr4:33319106`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:33319108`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806317.1

415 aa

208

415

NTP_transferase

GMPPB_C

PF00483 NTP_transferase 10-207 aa PF25087 GMPPB_C 298-414 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806317.1`	Pfam	`PF00483`	NTP_transferase	Family	10	207	4.5e-28	99.2	Nucleotidyl transferase
`XP_057806317.1`	Pfam	`PF25087`	GMPPB_C	Repeat	298	414	1.2e-36	125.5	GMPPB C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057950334.1
GTAGTAGTTCCAAATTCTGTTGGAATGATGGGATTAATCTGAGTTCCCTTTCCCCTACCCCACCCGTCTCCCCAGCTTGCATTCGGATCCGTTTAAATCAAATCGCATATTCCCGTCTTAAAACTTACAACTTACGATGTTGTTCTAGCTACTGTAATCATTTTGGCAGTTGGCTTCGCGTCACTTCAACATCTTTCCCTCTTCCTGCACTGGATTGCGATATTACTTTCACATGTTCTACACTTATTTCCCAATAGTTT...

CDS

1 records

下载 CDS FASTA

LOC131021226
ATGGGCAGCTCGGAAGAAAGAGTTGTTGCCGTGATCATGGTGGGAGGCCCTACTAAAGGAACTAGATTTAGGCCATTGTCACTGAATATCTCGAAACCGCTTTTTCCACTGGCAGGACAGGCTATGGTTCTTCATCCTATTACTGCTTGTAAACGGATCCCAAATCTGGTTCAGATCTTCCTCATTGGTTTTTATGAAGAGCGTGAATTCGCATTGTTTGTTTCGTCCATTTCTAATGAGCTTCGGGTGCCTGTGAGATA...

Protein

1 records

下载 Protein FASTA

XP_057806317.1
MGSSEERVVAVIMVGGPTKGTRFRPLSLNISKPLFPLAGQAMVLHPITACKRIPNLVQIFLIGFYEEREFALFVSSISNELRVPVRYLKEDKPHGSAGGLYNFRDRIMEENPSHIFLLNCDVCCSFPLPEMLEAHRRYGGIGTILVNKVSPESAYQFGELVADPDTNELLHYTEKPETFVSDRINCGVYVFSPGIFTAIQGVSTQRKERATLRRVTSFEALQPANRSLPTDFVKLDQDILSPLAGKKQFYVYETLDFWEQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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