当前解析结果
SmilChr04G002059| 统一新 Gene ID | SmilChr04G002059 |
|---|---|
| 名称 | SmilChr04G002059 |
| 描述 | pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 33338897 - 33344546 / + |
| NCBI Gene ID | LOC131021227 |
|---|---|
| GeneID | 131021227 |
| locus_tag | - |
| NCBI Name | LOC131021227 |
| 原始查询 | LOC131021227 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic-like |
| 产物 | pyridoxine/pyridoxamine 5'-phosphate oxidase 1%2C chloroplastic-like |
| Arabidopsis | AT5G49970 (PPOX)pyridoxin (pyrodoxamine) 5'-phosphate oxidase [Source:NCBI gene (formerly Entrezgene);Acc:835061] identity=74.9; qcov=0.981; evalue=0; confidence=high |
| Rice | Os10g0377800- identity=74.1; qcov=0.985; evalue=0; confidence=high |
| GO | GO:0004733 (pyridoxamine phosphate oxidase activity); GO:0005739 (mitochondrion); GO:0008615 (pyridoxine biosynthetic process); GO:0010181 (FMN binding); GO:0052856 (NAD(P)HX epimerase activity) |
| KEGG | smil00750 (Vitamin B6 metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01243 (PNPOx_N); PF03853 (YjeF_N); PF10590 (PNP_phzG_C); PF12766 (Pyridox_oxase_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021227 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057806322.1 |
| 2 | Mitochondrion | 线粒体 | 0.80000 | XP_057806319.1 |
| 3 | Chloroplast | 叶绿体 | 0.60000 | XP_057806321.1 |
| 4 | Peroxisome | 过氧化物酶体 | 0.60000 | XP_057806319.1 |
| 5 | Nucleus | 细胞核 | 0.40000 | XP_057806322.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:33338931 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B138,C47 |
Chr4:33339041 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr4:33339084 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr4:33339120 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B138,C47 |
Chr4:33339334 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr4:33339347 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B138,C47 |
Chr4:33340186 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B115,B78,D4 |
Chr4:33340859 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr4:33340949 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B110 |
Chr4:33341179 |
A |
AC |
1bp_insertion | frameshift_variant | 60 | A10,A15,A2,A22,A23,B103,B104,B105,B11,B110,B111,B117,B118,B128,B131,B139,B140,B17,B23,B25,B29,B40,B41,B45,B5,B52,B69,B71,B79,B82,B86,B93,B94,B95,C1,C11,C14,C17,C28,C30,C32,C42,C48,C51,C52,C54,C56,C62,C68,C69,C7,C70,C71,C73,C75,C76,D1,D10,D2,D7 |
Chr4:33341272 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr4:33341625 |
C |
CG |
1bp_insertion | frameshift_variant | 7 | A13,B110,B13,B58,C24,C54,C68 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057806319.1PF03853
YjeF_N 133-305 aa
PF12766
Pyridox_oxase_2 378-462 aa
PF01243
PNPOx_N 382-502 aa
PF10590
PNP_phzG_C 522-563 aa
XP_057806320.1PF03853
YjeF_N 110-282 aa
PF12766
Pyridox_oxase_2 355-439 aa
PF01243
PNPOx_N 359-479 aa
PF10590
PNP_phzG_C 499-540 aa
XP_057806321.1PF03853
YjeF_N 133-305 aa
PF01243
PNPOx_N 382-453 aa
XP_057806322.1PF03853
YjeF_N 37-209 aa
PF12766
Pyridox_oxase_2 282-366 aa
PF01243
PNPOx_N 286-406 aa
PF10590
PNP_phzG_C 426-467 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806319.1 |
Pfam | PF03853 |
YjeF_N | Domain | 133 | 305 | 4.6e-35 | 121.8 | YjeF-related protein N-terminus |
XP_057806319.1 |
Pfam | PF12766 |
Pyridox_oxase_2 | Domain | 378 | 462 | 6.8e-06 | 27.3 | Pyridoxamine 5'-phosphate oxidase, FMN-binding domain |
XP_057806319.1 |
Pfam | PF01243 |
PNPOx_N | Domain | 382 | 502 | 5.7e-30 | 104.9 | Pyridoxamine 5'-phosphate oxidase |
XP_057806319.1 |
Pfam | PF10590 |
PNP_phzG_C | Domain | 522 | 563 | 1.7e-21 | 76.5 | Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region |
XP_057806320.1 |
Pfam | PF03853 |
YjeF_N | Domain | 110 | 282 | 4.3e-35 | 121.9 | YjeF-related protein N-terminus |
XP_057806320.1 |
Pfam | PF12766 |
Pyridox_oxase_2 | Domain | 355 | 439 | 6.5e-06 | 27.4 | Pyridoxamine 5'-phosphate oxidase, FMN-binding domain |
XP_057806320.1 |
Pfam | PF01243 |
PNPOx_N | Domain | 359 | 479 | 5.3e-30 | 105.0 | Pyridoxamine 5'-phosphate oxidase |
XP_057806320.1 |
Pfam | PF10590 |
PNP_phzG_C | Domain | 499 | 540 | 1.6e-21 | 76.6 | Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region |
XP_057806321.1 |
Pfam | PF03853 |
YjeF_N | Domain | 133 | 305 | 4e-35 | 122.0 | YjeF-related protein N-terminus |
XP_057806321.1 |
Pfam | PF01243 |
PNPOx_N | Domain | 382 | 453 | 4.5e-16 | 60.0 | Pyridoxamine 5'-phosphate oxidase |
XP_057806322.1 |
Pfam | PF03853 |
YjeF_N | Domain | 37 | 209 | 3.3e-35 | 122.2 | YjeF-related protein N-terminus |
XP_057806322.1 |
Pfam | PF12766 |
Pyridox_oxase_2 | Domain | 282 | 366 | 5.3e-06 | 27.7 | Pyridoxamine 5'-phosphate oxidase, FMN-binding domain |
XP_057806322.1 |
Pfam | PF01243 |
PNPOx_N | Domain | 286 | 406 | 4.3e-30 | 105.3 | Pyridoxamine 5'-phosphate oxidase |
XP_057806322.1 |
Pfam | PF10590 |
PNP_phzG_C | Domain | 426 | 467 | 1.4e-21 | 76.8 | Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。