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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G002101

染色体: Chr04 坐标: 33895820-33900045 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G002101
名称SmilChr04G002101
描述pentatricopeptide repeat-containing protein At1g74750-like
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向33895820 - 33900045 / -

ID 对照

NCBI Gene IDLOC131021266
GeneID131021266
locus_tag-
NCBI NameLOC131021266
原始查询LOC131021266

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g74750-like
产物pentatricopeptide repeat-containing protein At1g74750-like
ArabidopsisAT1G74750 (AT1G74750)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843814]
identity=62.3; qcov=1.02; evalue=0; confidence=high
RiceOs12g0638900
-
identity=52.8; qcov=1.03; evalue=0; confidence=high
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131021266

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057806360.1
2 Mitochondrion 线粒体 0.80000 XP_057806361.1
3 Chloroplast stroma 叶绿体基质 0.60000 XP_057806360.1
4 Nucleus 细胞核 0.00000 XP_057806360.1
5 Chromosome 染色体 0.00000 XP_057806360.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:33896598 TG T 1bp_deletion frameshift_variant 2 B48,B60
Chr4:33896598 TG T 1bp_deletion CDS_variant 2 B48,B60
Chr4:33896705 G A EMS_canonical_SNV CDS_variant 1 D7
Chr4:33896726 G A EMS_canonical_SNV CDS_variant 1 B26
Chr4:33897686 C T EMS_canonical_SNV CDS_variant 4 B22,B41,B47,B58
Chr4:33897808 G A EMS_canonical_SNV CDS_variant 1 D7
Chr4:33897924 G A EMS_canonical_SNV CDS_variant 1 B55
Chr4:33898105 G A EMS_canonical_SNV stop_gained 11 A14,A21,B102,B118,B125,B28,B43,C37,C41,C69,C78
Chr4:33898123 C T EMS_canonical_SNV CDS_variant 1 B71
Chr4:33898166 G A EMS_canonical_SNV CDS_variant 1 B71
Chr4:33898177 C T EMS_canonical_SNV CDS_variant 1 B71
Chr4:33898185 G A EMS_canonical_SNV CDS_variant 1 B71

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806360.1
867 aa
N
1
434
867
PPR_3
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_3
PPR_1
PPR
PPR_2
TPR_24
PPR_long
PPR_3
PPR_1
PPR
PPR_2
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_long
PPR
PPR_3
PPR_2
PPR
C
PF13812 PPR_3 363-417 aa PF01535 PPR 373-402 aa PF12854 PPR_1 400-433 aa PF13041 PPR_2 404-452 aa PF01535 PPR 407-437 aa PF13812 PPR_3 407-450 aa PF13812 PPR_3 428-488 aa PF12854 PPR_1 436-467 aa PF01535 PPR 442-472 aa PF13041 PPR_2 442-488 aa PF23276 TPR_24 444-537 aa PF17177 PPR_long 459-561 aa PF13812 PPR_3 463-520 aa PF12854 PPR_1 471-503 aa PF01535 PPR 477-507 aa PF13041 PPR_2 482-519 aa PF13041 PPR_2 509-556 aa PF01535 PPR 512-542 aa PF13812 PPR_3 533-588 aa PF12854 PPR_1 541-573 aa PF01535 PPR 547-576 aa PF17177 PPR_long 563-664 aa PF01535 PPR 583-611 aa PF13812 PPR_3 607-662 aa PF13041 PPR_2 614-661 aa PF01535 PPR 618-647 aa
XP_057806361.1
858 aa
N
1
429
858
PPR_3
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_3
PPR_1
PPR
PPR_2
TPR_24
PPR_long
PPR_3
PPR_1
PPR
PPR_2
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_long
PPR
PPR_3
PPR_2
PPR
C
PF13812 PPR_3 354-408 aa PF01535 PPR 364-393 aa PF12854 PPR_1 391-424 aa PF13041 PPR_2 395-443 aa PF01535 PPR 398-428 aa PF13812 PPR_3 398-441 aa PF13812 PPR_3 419-479 aa PF12854 PPR_1 427-458 aa PF01535 PPR 433-463 aa PF13041 PPR_2 433-479 aa PF23276 TPR_24 435-528 aa PF17177 PPR_long 450-552 aa PF13812 PPR_3 454-511 aa PF12854 PPR_1 462-494 aa PF01535 PPR 468-498 aa PF13041 PPR_2 473-510 aa PF13041 PPR_2 500-547 aa PF01535 PPR 503-533 aa PF13812 PPR_3 524-579 aa PF12854 PPR_1 532-564 aa PF01535 PPR 538-567 aa PF17177 PPR_long 554-655 aa PF01535 PPR 574-602 aa PF13812 PPR_3 598-653 aa PF13041 PPR_2 605-652 aa PF01535 PPR 609-638 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057806360.1 Pfam PF13812 PPR_3 Repeat 363 417 3.1e-43 146.4 Pentatricopeptide repeat domain
XP_057806360.1 Pfam PF01535 PPR Repeat 373 402 5e-53 174.4 PPR repeat
XP_057806360.1 Pfam PF12854 PPR_1 Repeat 400 433 3.7e-55 184.0 PPR repeat
XP_057806360.1 Pfam PF13041 PPR_2 Repeat 404 452 3.8e-74 245.3 PPR repeat family
XP_057806360.1 Pfam PF01535 PPR Repeat 407 437 5e-53 174.4 PPR repeat
XP_057806360.1 Pfam PF13812 PPR_3 Repeat 407 450 3.1e-43 146.4 Pentatricopeptide repeat domain
XP_057806360.1 Pfam PF13812 PPR_3 Repeat 428 488 3.1e-43 146.4 Pentatricopeptide repeat domain
XP_057806360.1 Pfam PF12854 PPR_1 Repeat 436 467 3.7e-55 184.0 PPR repeat
XP_057806360.1 Pfam PF01535 PPR Repeat 442 472 5e-53 174.4 PPR repeat
XP_057806360.1 Pfam PF13041 PPR_2 Repeat 442 488 3.8e-74 245.3 PPR repeat family
XP_057806360.1 Pfam PF23276 TPR_24 Repeat 444 537 1.3e-16 61.4 Pentatricopeptide repeat-containing protein
XP_057806360.1 Pfam PF17177 PPR_long Repeat 459 561 2e-24 86.9 Pentacotripeptide-repeat region of PRORP
XP_057806360.1 Pfam PF13812 PPR_3 Repeat 463 520 3.1e-43 146.4 Pentatricopeptide repeat domain
XP_057806360.1 Pfam PF12854 PPR_1 Repeat 471 503 3.7e-55 184.0 PPR repeat
XP_057806360.1 Pfam PF01535 PPR Repeat 477 507 5e-53 174.4 PPR repeat
XP_057806360.1 Pfam PF13041 PPR_2 Repeat 482 519 3.8e-74 245.3 PPR repeat family
XP_057806360.1 Pfam PF13041 PPR_2 Repeat 509 556 3.8e-74 245.3 PPR repeat family
XP_057806360.1 Pfam PF01535 PPR Repeat 512 542 5e-53 174.4 PPR repeat
XP_057806360.1 Pfam PF13812 PPR_3 Repeat 533 588 3.1e-43 146.4 Pentatricopeptide repeat domain
XP_057806360.1 Pfam PF12854 PPR_1 Repeat 541 573 3.7e-55 184.0 PPR repeat
XP_057806360.1 Pfam PF01535 PPR Repeat 547 576 5e-53 174.4 PPR repeat
XP_057806360.1 Pfam PF17177 PPR_long Repeat 563 664 2e-24 86.9 Pentacotripeptide-repeat region of PRORP
XP_057806360.1 Pfam PF01535 PPR Repeat 583 611 5e-53 174.4 PPR repeat
XP_057806360.1 Pfam PF13812 PPR_3 Repeat 607 662 3.1e-43 146.4 Pentatricopeptide repeat domain
XP_057806360.1 Pfam PF13041 PPR_2 Repeat 614 661 3.8e-74 245.3 PPR repeat family
XP_057806360.1 Pfam PF01535 PPR Repeat 618 647 5e-53 174.4 PPR repeat
XP_057806361.1 Pfam PF13812 PPR_3 Repeat 354 408 2.7e-43 146.6 Pentatricopeptide repeat domain
XP_057806361.1 Pfam PF01535 PPR Repeat 364 393 4.9e-53 174.5 PPR repeat
XP_057806361.1 Pfam PF12854 PPR_1 Repeat 391 424 3.4e-55 184.2 PPR repeat
XP_057806361.1 Pfam PF13041 PPR_2 Repeat 395 443 3.4e-74 245.5 PPR repeat family
XP_057806361.1 Pfam PF01535 PPR Repeat 398 428 4.9e-53 174.5 PPR repeat
XP_057806361.1 Pfam PF13812 PPR_3 Repeat 398 441 2.7e-43 146.6 Pentatricopeptide repeat domain
XP_057806361.1 Pfam PF13812 PPR_3 Repeat 419 479 2.7e-43 146.6 Pentatricopeptide repeat domain
XP_057806361.1 Pfam PF12854 PPR_1 Repeat 427 458 3.4e-55 184.2 PPR repeat
XP_057806361.1 Pfam PF01535 PPR Repeat 433 463 4.9e-53 174.5 PPR repeat
XP_057806361.1 Pfam PF13041 PPR_2 Repeat 433 479 3.4e-74 245.5 PPR repeat family
XP_057806361.1 Pfam PF23276 TPR_24 Repeat 435 528 1.2e-16 61.5 Pentatricopeptide repeat-containing protein
XP_057806361.1 Pfam PF17177 PPR_long Repeat 450 552 1.9e-24 86.9 Pentacotripeptide-repeat region of PRORP
XP_057806361.1 Pfam PF13812 PPR_3 Repeat 454 511 2.7e-43 146.6 Pentatricopeptide repeat domain
XP_057806361.1 Pfam PF12854 PPR_1 Repeat 462 494 3.4e-55 184.2 PPR repeat
XP_057806361.1 Pfam PF01535 PPR Repeat 468 498 4.9e-53 174.5 PPR repeat
XP_057806361.1 Pfam PF13041 PPR_2 Repeat 473 510 3.4e-74 245.5 PPR repeat family
XP_057806361.1 Pfam PF13041 PPR_2 Repeat 500 547 3.4e-74 245.5 PPR repeat family
XP_057806361.1 Pfam PF01535 PPR Repeat 503 533 4.9e-53 174.5 PPR repeat
XP_057806361.1 Pfam PF13812 PPR_3 Repeat 524 579 2.7e-43 146.6 Pentatricopeptide repeat domain
XP_057806361.1 Pfam PF12854 PPR_1 Repeat 532 564 3.4e-55 184.2 PPR repeat
XP_057806361.1 Pfam PF01535 PPR Repeat 538 567 4.9e-53 174.5 PPR repeat
XP_057806361.1 Pfam PF17177 PPR_long Repeat 554 655 1.9e-24 86.9 Pentacotripeptide-repeat region of PRORP
XP_057806361.1 Pfam PF01535 PPR Repeat 574 602 4.9e-53 174.5 PPR repeat
XP_057806361.1 Pfam PF13812 PPR_3 Repeat 598 653 2.7e-43 146.6 Pentatricopeptide repeat domain
XP_057806361.1 Pfam PF13041 PPR_2 Repeat 605 652 3.4e-74 245.5 PPR repeat family
XP_057806361.1 Pfam PF01535 PPR Repeat 609 638 4.9e-53 174.5 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057950378.1
AAGGTGACAGTCACAGAGGCTCCCAAGTTGCTTGGAAACTCAATAGGTCACAAAAGCCATGAGAAAAAACTCAAGCAGCCGCCTTATTTAACCCTTCTTCTGTTTCATACTTTCTTTTCTTTAATTCTTTTTCTTGATTAAAATGTTTGATTCTTGATTTATTCCCCTCCTCCTCTATTAGTGTTGAGTGGTGGGTTGATTCTTCTGGGCTCTAAAGAACACTGTTGTTAGAAAATGATCCGAGCAAAGCATCTCGGTAA...
XM_057950377.1
TCTCTGAGTTTGTAAGTGGGTGTTTCTTGGTTTTAATGGTGGGTTGCTCATGGTGTGAGAAAATGATCCGAGCAAAGCATCTCGGTAACTTTTCCCAGACTGCCAGATCCCTTTTCCTAGGTGGACAAAGATGTAGTGCGGCAGATGGGAGTTCATGCACTTGCTCGGATGATGAGACTTGTATTTCTAGAAGGCCTCTGAGAGCAAATGTGCAACACTTGCAAGCACCATCCTCATTGTTGTCAAAAGCTTCAGTAGCA...

CDS

2 records

下载 CDS FASTA
LOC131021266
ATGGTGGGTTGCTCATGGTGTGAGAAAATGATCCGAGCAAAGCATCTCGGTAACTTTTCCCAGACTGCCAGATCCCTTTTCCTAGGTGGACAAAGATGTAGTGCGGCAGATGGGAGTTCATGCACTTGCTCGGATGATGAGACTTGTATTTCTAGAAGGCCTCTGAGAGCAAATGTGCAACACTTGCAAGCACCATCCTCATTGTTGTCAAAAGCTTCAGTAGCAGTAGGTTCACTGACTTCAGTCGATTCAGTAAAAGA...
LOC131021266
ATGATCCGAGCAAAGCATCTCGGTAACTTTTCCCAGACTGCCAGATCCCTTTTCCTAGGTGGACAAAGATGTAGTGCGGCAGATGGGAGTTCATGCACTTGCTCGGATGATGAGACTTGTATTTCTAGAAGGCCTCTGAGAGCAAATGTGCAACACTTGCAAGCACCATCCTCATTGTTGTCAAAAGCTTCAGTAGCAGTAGGTTCACTGACTTCAGTCGATTCAGTAAAAGAAGTGAATGCTAAAAAAAAGGACAATGG...

Protein

2 records

下载 Protein FASTA
XP_057806360.1
MVGCSWCEKMIRAKHLGNFSQTARSLFLGGQRCSAADGSSCTCSDDETCISRRPLRANVQHLQAPSSLLSKASVAVGSLTSVDSVKEVNAKKKDNGSLSKGVAASHASEREISVSYADDIDANDMLHSSPPIAEQFVKAGMAAVGLLSDIVNYRIPMTDGSATVTPPSNSVFERTKQVSSIRPPNIKTSRKERVSVKPSAARVYGSKFTSVPDGAKGRADKAGVEEGVANESNNASRNFVASHGLSSDPRDRKRPIPQKS...
XP_057806361.1
MIRAKHLGNFSQTARSLFLGGQRCSAADGSSCTCSDDETCISRRPLRANVQHLQAPSSLLSKASVAVGSLTSVDSVKEVNAKKKDNGSLSKGVAASHASEREISVSYADDIDANDMLHSSPPIAEQFVKAGMAAVGLLSDIVNYRIPMTDGSATVTPPSNSVFERTKQVSSIRPPNIKTSRKERVSVKPSAARVYGSKFTSVPDGAKGRADKAGVEEGVANESNNASRNFVASHGLSSDPRDRKRPIPQKSRSYSSQFTP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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