当前解析结果
SmilChr04G002102| 统一新 Gene ID | SmilChr04G002102 |
|---|---|
| 名称 | SmilChr04G002102 |
| 描述 | uncharacterized SmilChr04G002102 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 33925772 - 33934824 / + |
| NCBI Gene ID | LOC131021267 |
|---|---|
| GeneID | 131021267 |
| locus_tag | - |
| NCBI Name | LOC131021267 |
| 原始查询 | LOC131021267 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0315200; species=rice; confidence=medium |
| 产物 | hit=Os08g0315200; species=rice; confidence=medium |
| Arabidopsis | -- |
| Rice | Os08g0315200- identity=35.7; qcov=0.475; evalue=3.92e-28; confidence=medium |
| GO | GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00098 (zf-CCHC); PF03732 (PEG10_N-capsid); PF19259 (Ty3_capsid) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021267 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057806362.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057806362.1 |
| 3 | Cytoplasmic granule | 细胞质颗粒 | 0.20000 | XP_057806362.1 |
| 4 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.20000 | XP_057806362.1 |
| 5 | Cytosol | 细胞质基质 | 0.20000 | XP_057806362.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:33930145 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C53 |
Chr4:33930152 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B104,B86,C53 |
Chr4:33930154 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | B104 |
Chr4:33930154 |
CT |
C |
1bp_deletion | CDS_variant | 1 | B104 |
Chr4:33930187 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B28,B99,C8,D8 |
Chr4:33930202 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B119 |
Chr4:33930224 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B66,D5 |
Chr4:33930232 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B39,B63 |
Chr4:33930259 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B140,D3 |
Chr4:33930283 |
C |
CT |
1bp_insertion | stop_gained,frameshift_variant | 3 | A22,A25,B11 |
Chr4:33930283 |
C |
CT |
1bp_insertion | CDS_variant | 3 | A22,A25,B11 |
Chr4:33930290 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B140,B40 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057806362.1PF19259
Ty3_capsid 62-224 aa
PF03732
PEG10_N-capsid 63-141 aa
PF00098
zf-CCHC 322-338 aa
XP_057806363.1PF19259
Ty3_capsid 62-224 aa
PF03732
PEG10_N-capsid 63-141 aa
PF00098
zf-CCHC 322-338 aa
XP_057806364.1PF19259
Ty3_capsid 49-211 aa
PF03732
PEG10_N-capsid 50-128 aa
PF00098
zf-CCHC 309-325 aa
XP_057806365.1PF19259
Ty3_capsid 49-211 aa
PF03732
PEG10_N-capsid 50-128 aa
PF00098
zf-CCHC 309-325 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806362.1 |
Pfam | PF19259 |
Ty3_capsid | Domain | 62 | 224 | 1.3e-08 | 35.2 | Ty3 transposon capsid-like protein |
XP_057806362.1 |
Pfam | PF03732 |
PEG10_N-capsid | Domain | 63 | 141 | 4.1e-14 | 53.4 | Retrotransposon-derived protein PEG10, N-terminal capsid-like domain |
XP_057806362.1 |
Pfam | PF00098 |
zf-CCHC | Domain | 322 | 338 | 1e-05 | 26.1 | Zinc knuckle |
XP_057806363.1 |
Pfam | PF19259 |
Ty3_capsid | Domain | 62 | 224 | 1.3e-08 | 35.2 | Ty3 transposon capsid-like protein |
XP_057806363.1 |
Pfam | PF03732 |
PEG10_N-capsid | Domain | 63 | 141 | 4.1e-14 | 53.4 | Retrotransposon-derived protein PEG10, N-terminal capsid-like domain |
XP_057806363.1 |
Pfam | PF00098 |
zf-CCHC | Domain | 322 | 338 | 1e-05 | 26.1 | Zinc knuckle |
XP_057806364.1 |
Pfam | PF19259 |
Ty3_capsid | Domain | 49 | 211 | 1.2e-08 | 35.3 | Ty3 transposon capsid-like protein |
XP_057806364.1 |
Pfam | PF03732 |
PEG10_N-capsid | Domain | 50 | 128 | 3.9e-14 | 53.5 | Retrotransposon-derived protein PEG10, N-terminal capsid-like domain |
XP_057806364.1 |
Pfam | PF00098 |
zf-CCHC | Domain | 309 | 325 | 9.7e-06 | 26.2 | Zinc knuckle |
XP_057806365.1 |
Pfam | PF19259 |
Ty3_capsid | Domain | 49 | 211 | 1.2e-08 | 35.3 | Ty3 transposon capsid-like protein |
XP_057806365.1 |
Pfam | PF03732 |
PEG10_N-capsid | Domain | 50 | 128 | 3.9e-14 | 53.5 | Retrotransposon-derived protein PEG10, N-terminal capsid-like domain |
XP_057806365.1 |
Pfam | PF00098 |
zf-CCHC | Domain | 309 | 325 | 9.7e-06 | 26.2 | Zinc knuckle |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
6 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。