当前解析结果
SmilChr04G002124| 统一新 Gene ID | SmilChr04G002124 |
|---|---|
| 名称 | SmilChr04G002124 |
| 描述 | hypersensitive-induced reaction 1 protein |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 34256538 - 34258161 / + |
| NCBI Gene ID | LOC131021284 |
|---|---|
| GeneID | 131021284 |
| locus_tag | - |
| NCBI Name | LOC131021284 |
| 原始查询 | LOC131021284 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hypersensitive-induced reaction 1 protein |
| 产物 | hypersensitive-induced reaction 1 protein |
| Arabidopsis | AT5G62740 (HIR1)SPFH/Band 7/PHB domain-containing membrane-associated protein family [Source:NCBI gene (formerly Entrezgene);Acc:836395] identity=88.8; qcov=0.944; evalue=0; confidence=high |
| Rice | Os05g0591900 (HIRL1)hypersensitive-induced response protein-like protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:4339791] identity=89.8; qcov=0.934; evalue=0; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF01145 (Band_7) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021284 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057806392.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057806392.1 |
| 3 | Vesicle | 囊泡 | 0.20000 | XP_057806392.1 |
| 4 | Endosome | 内体 | 0.20000 | XP_057806392.1 |
| 5 | Endosome membrane | 内体膜 | 0.20000 | XP_057806392.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:34256948 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C16 |
Chr4:34256992 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B1,B22 |
Chr4:34257244 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B104,B114,B22,B25,D11 |
Chr4:34257260 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B59,B86 |
Chr4:34257375 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C23,D10 |
Chr4:34257383 |
GA |
G |
1bp_deletion | frameshift_variant | 129 | A1,A14,A2,A23,A24,A25,A4,A6,A7,A8,A9,B10,B102,B103,B104,B105,B107,B108,B111,B114,B122,B124,B127,B131,B132,B138,B139,B14,B140,B15,B16,B17,B18,B19,B21,B22,B24,B25,B26,B28,B30,B31,B33,B34,B35,B36,B37,B44,B45,B47,B5,B53,B56,B58,B6,B61,B62,B63,B64,B66,B68,B69,B70,B71,B73,B78,B82,B83,B85,B91,B96,C16,C17,C18,C19,C20,C21,C22,C27,C28,C3,C30,C31,C32,C33,C34,C35,C36,C38,C39,C4,C40,C42,C44,C45,C46,C47,C48,C50,C53,C57,C58,C59,C6,C61,C62,C63,C65,C67,C68,C7,C71,C73,C74,C75,C76,C8,C81,C84,C87,C9,D10,D11,D3,D4,D5,D6,D7,D9 |
Chr4:34257384 |
A |
AT |
1bp_insertion | frameshift_variant | 1 | B74 |
Chr4:34257384 |
A |
AT |
1bp_insertion | CDS_variant | 1 | B74 |
Chr4:34257583 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B119 |
Chr4:34257749 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B8 |
Chr4:34257749 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B8 |
Chr4:34257978 |
T |
TA |
1bp_insertion | frameshift_variant | 70 | A14,A22,A23,A5,A7,A8,B10,B103,B107,B108,B117,B121,B126,B129,B131,B133,B138,B19,B23,B24,B25,B28,B31,B33,B44,B47,B48,B5,B50,B54,B58,B59,B60,B61,B63,B66,B74,B81,B83,B85,B86,B89,B91,B99,C17,C20,C21,C26,C28,C29,C3,C30,C32,C34,C35,C39,C40,C43,C57,C63,C68,C73,C75,C76,C77,C79,C81,C84,C87,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057806392.1PF01145
Band_7 9-182 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806392.1 |
Pfam | PF01145 |
Band_7 | Domain | 9 | 182 | 6.2e-30 | 105.2 | SPFH domain / Band 7 family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。