Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002173`

染色体: Chr04 坐标: 35126890-35132312 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002173`
名称	SmilChr04G002173
描述	tRNA-specific adenosine deaminase TAD2
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	35126890 - 35132312 / `+`

ID 对照

NCBI Gene ID	`LOC131021322`
GeneID	`131021322`
locus_tag	`-`
NCBI Name	`LOC131021322`
原始查询	`LOC131021322`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	tRNA-specific adenosine deaminase TAD2
产物	tRNA-specific adenosine deaminase TAD2
Arabidopsis	`AT1G48175` (emb2191) Cytidine/deoxycytidylate deaminase family protein [Source:NCBI gene (formerly Entrezgene);Acc:841237] identity=67.2; qcov=0.862; evalue=2.38e-61; confidence=high
Rice	`Os03g0321900` - identity=65.9; qcov=0.868; evalue=1.3e-62; confidence=high
GO	GO:0002100 (tRNA wobble adenosine to inosine editing); GO:0008270 (zinc ion binding); GO:0052717 (tRNA-specific adenosine-34 deaminase activity)
KEGG	-
Pfam	PF00383 (dCMP_cyt_deam_1); PF14437 (MafB19-deam)
InterPro	-
eggNOG	-
NR	GeneID:131021322

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057806440.1`
2	Nucleus	细胞核	1.00000	`XP_057806445.1`
3	Cytoplasm	细胞质	1.00000	`XP_057806445.1`
4	Chromosome	染色体	0.00000	`XP_057806440.1`
5	Centromere	着丝粒	0.00000	`XP_057806440.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:35127557`	`GT`	`G`	1bp_deletion	frameshift_variant	68	A1,A18,A2,A21,A23,A6,A9,B11,B111,B113,B114,B12,B122,B127,B13,B132,B139,B17,B33,B34,B4,B41,B45,B47,B52,B55,B56,B6,B60,B62,B68,B69,B7,B72,B73,B77,B80,B94,B96,B97,B98,C11,C18,C20,C22,C26,C3,C38,C39,C4,C44,C48,C5,C52,C64,C66,C67,C69,C7,C72,C75,C86,C9,D11,D2,D5,D7,D8
`Chr4:35127589`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr4:35131932`	`G`	`GT`	1bp_insertion	frameshift_variant	43	A4,A9,B10,B105,B134,B135,B136,B14,B15,B23,B36,B42,B43,B46,B57,B6,B74,B78,B88,B98,C17,C19,C24,C27,C28,C30,C31,C33,C35,C37,C43,C45,C46,C53,C55,C63,C7,C71,C73,C74,C76,C80,D1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806440.1

234 aa

117

234

dCMP_cyt_deam_1

MafB19-deam

PF00383 dCMP_cyt_deam_1 67-164 aa PF14437 MafB19-deam 67-173 aa

XP_057806441.1

234 aa

117

234

dCMP_cyt_deam_1

MafB19-deam

PF00383 dCMP_cyt_deam_1 67-164 aa PF14437 MafB19-deam 67-173 aa

XP_057806442.1

231 aa

116

231

dCMP_cyt_deam_1

MafB19-deam

PF00383 dCMP_cyt_deam_1 67-164 aa PF14437 MafB19-deam 67-173 aa

XP_057806443.1

223 aa

112

223

dCMP_cyt_deam_1

MafB19-deam

PF00383 dCMP_cyt_deam_1 55-153 aa PF14437 MafB19-deam 55-162 aa

XP_057806444.1

209 aa

104

209

dCMP_cyt_deam_1

MafB19-deam

PF00383 dCMP_cyt_deam_1 42-139 aa PF14437 MafB19-deam 42-148 aa

XP_057806445.1

198 aa

198

dCMP_cyt_deam_1

MafB19-deam

PF00383 dCMP_cyt_deam_1 29-128 aa PF14437 MafB19-deam 30-137 aa

XP_057806446.1

187 aa

187

dCMP_cyt_deam_1

MafB19-deam

PF00383 dCMP_cyt_deam_1 12-117 aa PF14437 MafB19-deam 13-126 aa

XP_057806447.1

152 aa

152

dCMP_cyt_deam_1

MafB19-deam

PF00383 dCMP_cyt_deam_1 19-82 aa PF14437 MafB19-deam 19-91 aa

XP_057806448.1

152 aa

152

dCMP_cyt_deam_1

MafB19-deam

PF00383 dCMP_cyt_deam_1 19-82 aa PF14437 MafB19-deam 19-91 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806440.1`	Pfam	`PF00383`	dCMP_cyt_deam_1	Domain	67	164	3.5e-20	72.5	Cytidine and deoxycytidylate deaminase zinc-binding region
`XP_057806440.1`	Pfam	`PF14437`	MafB19-deam	Family	67	173	1.3e-15	58.1	MafB19-like deaminase
`XP_057806441.1`	Pfam	`PF00383`	dCMP_cyt_deam_1	Domain	67	164	3.5e-20	72.5	Cytidine and deoxycytidylate deaminase zinc-binding region
`XP_057806441.1`	Pfam	`PF14437`	MafB19-deam	Family	67	173	1.3e-15	58.1	MafB19-like deaminase
`XP_057806442.1`	Pfam	`PF00383`	dCMP_cyt_deam_1	Domain	67	164	3.2e-20	72.6	Cytidine and deoxycytidylate deaminase zinc-binding region
`XP_057806442.1`	Pfam	`PF14437`	MafB19-deam	Family	67	173	1.3e-15	58.2	MafB19-like deaminase
`XP_057806443.1`	Pfam	`PF00383`	dCMP_cyt_deam_1	Domain	55	153	8.1e-21	74.6	Cytidine and deoxycytidylate deaminase zinc-binding region
`XP_057806443.1`	Pfam	`PF14437`	MafB19-deam	Family	55	162	1e-15	58.5	MafB19-like deaminase
`XP_057806444.1`	Pfam	`PF00383`	dCMP_cyt_deam_1	Domain	42	139	2.4e-20	73.1	Cytidine and deoxycytidylate deaminase zinc-binding region
`XP_057806444.1`	Pfam	`PF14437`	MafB19-deam	Family	42	148	1.4e-15	58.0	MafB19-like deaminase
`XP_057806445.1`	Pfam	`PF00383`	dCMP_cyt_deam_1	Domain	29	128	4.5e-21	75.4	Cytidine and deoxycytidylate deaminase zinc-binding region
`XP_057806445.1`	Pfam	`PF14437`	MafB19-deam	Family	30	137	9.5e-16	58.6	MafB19-like deaminase
`XP_057806446.1`	Pfam	`PF00383`	dCMP_cyt_deam_1	Domain	12	117	1.1e-22	80.6	Cytidine and deoxycytidylate deaminase zinc-binding region
`XP_057806446.1`	Pfam	`PF14437`	MafB19-deam	Family	13	126	2.7e-17	63.6	MafB19-like deaminase
`XP_057806447.1`	Pfam	`PF00383`	dCMP_cyt_deam_1	Domain	19	82	3.7e-11	43.5	Cytidine and deoxycytidylate deaminase zinc-binding region
`XP_057806447.1`	Pfam	`PF14437`	MafB19-deam	Family	19	91	1.3e-08	35.6	MafB19-like deaminase
`XP_057806448.1`	Pfam	`PF00383`	dCMP_cyt_deam_1	Domain	19	82	3.7e-11	43.5	Cytidine and deoxycytidylate deaminase zinc-binding region
`XP_057806448.1`	Pfam	`PF14437`	MafB19-deam	Family	19	91	1.3e-08	35.6	MafB19-like deaminase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

9 records

下载 cDNA FASTA

XM_057950459.1
GGTTCAAGATCGGTAATTTTGGTCCGGACAAAATTTTCGGGTCTTCGGTCTGGGCCGATGCTCACCTCCAAACGCCGCTTTTCCTTTCCTTCTCTTGCGCCGCCGCGTTCTTTCTCTCTCTTCCTTTCCCCCTACGGCAACAAGGCGGTATCCGCTTTCAAGTTGAGGAAGGGGCTTATTGCTCCTAACAAGCTTCTCATTCGTGTTTCATTCTCATACTCTACTTATTTTAGAAACAAGGATGAGGTCTTTTGCTGAGG...

XM_057950457.1
TTCAAGATCGGTAATTTTGGTCCGGACAAAATTTTCGGGTCTTCGGTCTGGGCCGATGCTCACCTCCAAACGCCGCTTTTCCTTTCCTTCTCTTGCGCCGCCGCGTTCTTTCTCTCTCTTCCTTTCCCCCTACGGCAACAAGGCGGTATCCGCTTTCAAGTTGAGGAAGGGGCTTATTGCTCCTAACAAGCTTCTCATTCGTGTTTCATTCTCATACTCTACTTATTTTAGAAACAAGGATGAGGTCTTTTGCTGAGGAA...

CDS

9 records

下载 CDS FASTA

LOC131021322
ATGAGGTCTTTTGCTGAGGAAGCCGAATGTGTTGCATTTATGAACCTCGCTCTAGAACAGGTGATGGCTGCCCAAATTCCGAATTTAATGTTTGGTTTTGCACTGTCCGGTGACGATATTATCTTCTATTTTCAGTTATTTAAGCTTAATACATATGATGTAAAGAAGACATTGAAATTTTTACCGGTTTTCTGCTGCCAGGCAAAGCTAGCATTGGACAGCCTTGAAGTGCCTGTGGGTTGCGTAATCGTAGAGGAACA...

Protein

9 records

下载 Protein FASTA

XP_057806440.1
MRSFAEEAECVAFMNLALEQVMAAQIPNLMFGFALSGDDIIFYFQLFKLNTYDVKKTLKFLPVFCCQAKLALDSLEVPVGCVIVEEQNVISVGRNRTTETRNATRHAEMEAIDMLLEKWKKNGLTTEEIELRFSKCTLYVTCEPCIMCAAALSIIGVEEVYYGCANDKFGGCGSILSLHTCSSGKLPSGGTSKRKGFKCTGGIMATEAVNLLKSFYEQGNPNAPKPHRIVVPLA

XP_057806441.1
MRSFAEEAECVAFMNLALEQVMAAQIPNLMFGFALSGDDIIFYFQLFKLNTYDVKKTLKFLPVFCCQAKLALDSLEVPVGCVIVEEQNVISVGRNRTTETRNATRHAEMEAIDMLLEKWKKNGLTTEEIELRFSKCTLYVTCEPCIMCAAALSIIGVEEVYYGCANDKFGGCGSILSLHTCSSGKLPSGGTSKRKGFKCTGGIMATEAVNLLKSFYEQGNPNAPKPHRIVVPLA

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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