当前解析结果
SmilChr04G002203| 统一新 Gene ID | SmilChr04G002203 |
|---|---|
| 名称 | SmilChr04G002203 |
| 描述 | phospholipase A2-alpha-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 35666182 - 35669610 / + |
| NCBI Gene ID | LOC131021351 |
|---|---|
| GeneID | 131021351 |
| locus_tag | - |
| NCBI Name | LOC131021351 |
| 原始查询 | LOC131021351 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Arabidopsis/Rice homolog |
|---|---|
| 描述 | phospholipase A2-alpha-like |
| 产物 | phospholipase A2-alpha-like |
| Arabidopsis | AT2G06925 (PLA2-ALPHA)Phospholipase A2 family protein [Source:NCBI gene (formerly Entrezgene);Acc:815261] identity=53.4; qcov=0.986; evalue=3.14e-59; confidence=high |
| Rice | Os03g0708000 (PLA2-III)- identity=57; qcov=0.865; evalue=5.38e-48; confidence=medium |
| GO | GO:0004623 (A2-type glycerophospholipase activity); GO:0005509 (calcium ion binding); GO:0006644 (phospholipid metabolic process); GO:0016042 (lipid catabolic process); GO:0050482 (arachidonate secretion) |
| KEGG | smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00565 (Ether lipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00590 (Arachidonic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil00591 (Linoleic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil00592 (alpha-Linolenic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021351 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 0.80000 | XP_057806495.1 |
| 2 | Cytoplasmic vesicle | 细胞质囊泡 | 0.20000 | XP_057806495.1 |
| 3 | Secretory vesicle | Secretory vesicle | 0.20000 | XP_057806495.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057806495.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057806495.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:35669356 |
CA |
C |
1bp_deletion | frameshift_variant | 1 | C43 |
Chr4:35669356 |
CA |
C |
1bp_deletion | CDS_variant | 1 | C43 |
Chr4:35669388 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A7,B30,B35,B55,C23 |
Chr4:35669443 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B131,B91,C34,C39,C75 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。