Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002212`

染色体: Chr04 坐标: 35793103-35796643 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002212`
名称	SmilChr04G002212
描述	uncharacterized SmilChr04G002212
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	35793103 - 35796643 / `-`

ID 对照

NCBI Gene ID	`LOC131021362`
GeneID	`131021362`
locus_tag	`-`
NCBI Name	`LOC131021362`
原始查询	`LOC131021362`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	confidence=no_hit
产物	confidence=no_hit
Arabidopsis	`-` -
Rice	`-` -
GO	GO:0003824 (catalytic activity)
KEGG	-
Pfam	PF00155 (Aminotran_1_2); PF01041 (DegT_DnrJ_EryC1); PF01276 (OKR_DC_1); PF03711 (OKR_DC_1_C)
InterPro	-
eggNOG	-
NR	GeneID:131021362

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057806508.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057806508.1`
3	Nucleus	细胞核	0.00000	`XP_057806508.1`
4	Chromosome	染色体	0.00000	`XP_057806508.1`
5	Centromere	着丝粒	0.00000	`XP_057806508.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:35793352`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B59,B63,C53
`Chr4:35793443`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C35
`Chr4:35793590`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A1,C23
`Chr4:35793658`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C14,C2
`Chr4:35793845`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr4:35794276`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B12
`Chr4:35796419`	`AC`	`A`	1bp_deletion	frameshift_variant	1	C79
`Chr4:35796419`	`AC`	`A`	1bp_deletion	CDS_variant	1	C79
`Chr4:35796432`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B88,C53
`Chr4:35796529`	`CA`	`C`	1bp_deletion	frameshift_variant	18	A14,B102,B105,B22,B32,B46,B72,B78,B92,B97,C33,C38,C43,C46,C54,C66,C70,C74
`Chr4:35796542`	`TAG`	`T`	2bp_deletion	frameshift_variant	1	B35
`Chr4:35796542`	`TAG`	`T`	2bp_deletion	CDS_variant	1	B35

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806508.1

584 aa

292

584

OKR_DC_1

Aminotran_1_2

DegT_DnrJ_EryC1

OKR_DC_1_C

PF01276 OKR_DC_1 100-409 aa PF00155 Aminotran_1_2 163-326 aa PF01041 DegT_DnrJ_EryC1 185-297 aa PF03711 OKR_DC_1_C 506-566 aa

XP_057806509.1

551 aa

276

551

OKR_DC_1

Aminotran_1_2

DegT_DnrJ_EryC1

OKR_DC_1_C

PF01276 OKR_DC_1 67-376 aa PF00155 Aminotran_1_2 130-293 aa PF01041 DegT_DnrJ_EryC1 152-264 aa PF03711 OKR_DC_1_C 473-533 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806508.1`	Pfam	`PF01276`	OKR_DC_1	Domain	100	409	3.3e-67	227.8	Orn/Lys/Arg decarboxylase, major domain
`XP_057806508.1`	Pfam	`PF00155`	Aminotran_1_2	Domain	163	326	1.4e-08	35.1	Aminotransferase class I and II
`XP_057806508.1`	Pfam	`PF01041`	DegT_DnrJ_EryC1	Domain	185	297	3.3e-06	27.3	DegT/DnrJ/EryC1/StrS aminotransferase family
`XP_057806508.1`	Pfam	`PF03711`	OKR_DC_1_C	Domain	506	566	4.6e-10	40.1	Orn/Lys/Arg decarboxylase, C-terminal domain
`XP_057806509.1`	Pfam	`PF01276`	OKR_DC_1	Domain	67	376	2.7e-67	228.1	Orn/Lys/Arg decarboxylase, major domain
`XP_057806509.1`	Pfam	`PF00155`	Aminotran_1_2	Domain	130	293	1.2e-08	35.3	Aminotransferase class I and II
`XP_057806509.1`	Pfam	`PF01041`	DegT_DnrJ_EryC1	Domain	152	264	3e-06	27.4	DegT/DnrJ/EryC1/StrS aminotransferase family
`XP_057806509.1`	Pfam	`PF03711`	OKR_DC_1_C	Domain	473	533	4.4e-10	40.1	Orn/Lys/Arg decarboxylase, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057950525.1
TTGTGATGAAAAAGAAGTTTATATTAATCCTACAAAACGTACTATTTGACATAAATAGAAGTTTTTACAGACTCTTCTCTCCTTCTGGATATGGTGAGTCTATTGCCAAATTTTGAATCCATCATTTCTCATTCTCTCTCTCACACACACCCGGAGTTAGATTCCCTTACCATATCATACTCGTATATGCAGAGCTTGAGCGTGAGTAATCGCGCTAACTGGGGTTTCACACTCAGCACAACTCCAAGAGCTTGTATTTC...

XM_057950526.1
AAAAAGAAGTTTATATTAATCCTACAAAACGTACTATTTGACATAAATAGAAGTTTTTACAGACTCTTCTCTCCTTCTGGATATGAGCTTGAGCGTGAGTAATCGCGCTAACTGGGGTTTCACACTCAGCACAACTCCAAGAGCTTGTATTTCGCAGCAAACTTTCTGTCTAGCATTAGGGAACAAGAAAGAAAACAAGGGACATAGTGGGATCTTAGAACTTGACCCAACTGATAACTTGGTTGAGAATGATTCTCAAA...

CDS

2 records

下载 CDS FASTA

LOC131021362
ATGAGCTTGAGCGTGAGTAATCGCGCTAACTGGGGTTTCACACTCAGCACAACTCCAAGAGCTTGTATTTCGCAGCAAACTTTCTGTCTAGCATTAGGGAACAAGAAAGAAAACAAGGGACATAGTGGGATCTTAGAACTTGACCCAACTGATAACTTGGTTGAGAATGATTCTCAAAAGCTCAAGGAATACAGATTGCCTCCTTTGGTTAGTGCATTGAAAGCTTCAGTGGAGGAAAATGCAGCCAGTTTTCACTTTCC...

LOC131021362
ATGGTGAGTCTATTGCCAAATTTTGAATCCATCATTTCTCATTCTCTCTCTCACACACACCCGGAGTTAGATTCCCTTACCATATCATACTCGTATATGCAGAGCTTGAGCGTGAGTAATCGCGCTAACTGGGGTTTCACACTCAGCACAACTCCAAGAGCTTGTATTTCGCAGCAAACTTTCTGTCTAGCATTAGGGAACAAGAAAGAAAACAAGGGACATAGTGGGATCTTAGAACTTGACCCAACTGATAACTTGGT...

Protein

2 records

下载 Protein FASTA

XP_057806508.1
MVSLLPNFESIISHSLSHTHPELDSLTISYSYMQSLSVSNRANWGFTLSTTPRACISQQTFCLALGNKKENKGHSGILELDPTDNLVENDSQKLKEYRLPPLVSALKASVEENAASFHFPGHNRGQAAPSSLTRLIGARPFLHDLPELPELDNLFAPEGPILQAQKQAAALFGASETWFLIGGSTCGVQAAIMATCLPGDVLILPRNSHISAISAMVLSSVVPKYIVPEYDPEWDIAGGITPLQVEEAIKELEMEGLKPA...

XP_057806509.1
MSLSVSNRANWGFTLSTTPRACISQQTFCLALGNKKENKGHSGILELDPTDNLVENDSQKLKEYRLPPLVSALKASVEENAASFHFPGHNRGQAAPSSLTRLIGARPFLHDLPELPELDNLFAPEGPILQAQKQAAALFGASETWFLIGGSTCGVQAAIMATCLPGDVLILPRNSHISAISAMVLSSVVPKYIVPEYDPEWDIAGGITPLQVEEAIKELEMEGLKPAAVFVVSPSYHGVCSDIGAISELCQKNEIPVIVD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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