Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002237`

染色体: Chr04 坐标: 36095048-36120297 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002237`
名称	SmilChr04G002237
描述	L-arabinokinase-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	36095048 - 36120297 / `+`

ID 对照

NCBI Gene ID	`LOC131021381`
GeneID	`131021381`
locus_tag	`-`
NCBI Name	`LOC131021381`
原始查询	`LOC131021381`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	L-arabinokinase-like
产物	L-arabinokinase-like
Arabidopsis	`AT4G16130` (ARA1) arabinose kinase [Source:NCBI gene (formerly Entrezgene);Acc:827299] identity=69; qcov=0.996; evalue=0; confidence=high
Rice	`Os02g0141300` (CAP1) - identity=68.6; qcov=0.989; evalue=0; confidence=high
GO	GO:0005524 (ATP binding)
KEGG	smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01250 (Biosynthesis of nucleotide sugars - Salvia miltiorrhiza (redroot sage))
Pfam	PF00288 (GHMP_kinases_N); PF10509 (GalKase_gal_bdg)
InterPro	-
eggNOG	-
NR	GeneID:131021381

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057806533.1`
2	Peroxisome	过氧化物酶体	0.80000	`XP_057806533.1`
3	Nucleus	细胞核	0.00000	`XP_057806533.1`
4	Chromosome	染色体	0.00000	`XP_057806533.1`
5	Centromere	着丝粒	0.00000	`XP_057806533.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:36097745`	`C`	`CG`	1bp_insertion	frameshift_variant	1	C2
`Chr4:36097745`	`C`	`CG`	1bp_insertion	CDS_variant	1	C2
`Chr4:36097786`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B109,C59,C84
`Chr4:36101395`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr4:36101713`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A21,B54,C35
`Chr4:36103052`	`T`	`TC`	1bp_insertion	frameshift_variant	2	A1,C23
`Chr4:36103052`	`T`	`TC`	1bp_insertion	CDS_variant	2	A1,C23
`Chr4:36105211`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C2
`Chr4:36105278`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C14,C2
`Chr4:36105279`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:36105515`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A21,B54,C35
`Chr4:36105519`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B131,B41,B99,C39,C75

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806533.1

994 aa

497

994

GalKase_gal_bdg

GHMP_kinases_N

PF10509 GalKase_gal_bdg 489-528 aa PF00288 GHMP_kinases_N 605-693 aa

XP_057806534.1

843 aa

422

843

GalKase_gal_bdg

GHMP_kinases_N

PF10509 GalKase_gal_bdg 338-377 aa PF00288 GHMP_kinases_N 454-542 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806533.1`	Pfam	`PF10509`	GalKase_gal_bdg	Domain	489	528	4.2e-07	30.1	Galactokinase galactose-binding signature
`XP_057806533.1`	Pfam	`PF00288`	GHMP_kinases_N	Domain	605	693	1.1e-17	64.7	GHMP kinases N terminal domain
`XP_057806534.1`	Pfam	`PF10509`	GalKase_gal_bdg	Domain	338	377	3.2e-07	30.5	Galactokinase galactose-binding signature
`XP_057806534.1`	Pfam	`PF00288`	GHMP_kinases_N	Domain	454	542	1.1e-17	64.7	GHMP kinases N terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057950550.1
CTCAAAGAGTCGTGAGAATTCAATCTCGAGAAAGGGAGGATCTTCAATTTATCTCTCCCGCGCTATTTCCGATGCAGATCCCCATCCCCACATACCATATTATCCTTTCCCGTTTGTTAAATCTGCTCAGCCGACAACCACAATCAGTATACATTATATCGTATCCGGTCTCCGACTCTGTTGATACTTACCAATTAAGTGCAGTTACGTTACAGTTGTACTGAAAATTACTAGTCCAAATTTTATAAAACTCATAAATT...

XM_057950551.1
CTGGTGCCCCAGACCACATTTTTACCACTGAAATACAGTCACCTAAACTCTTCATCAGGAAGGTGCTATTAGATATTGGAGCAGTTCAAGCAGATGCTTTGACAGTTGATCGTCTTGCGTCCTTGGAGAAGTTGGGACTTCATATATGCTGAATATGTTATGGTGGCTGGACGTGGCAGTCACTCTATCATTTGGCAGATAGCTGAAGATTATTCTCATTGCGACTTCGTTATACGTCTCCCAGGATACTGCCCAATGCC...

CDS

2 records

下载 CDS FASTA

LOC131021381
ATGCAGGAAGAAATGGGACAAAGGCCTCTTGTTTTTGCCTACTATGTCTCTGGTCATGGATTTGGCCATGCCACCCGTGTTGCCGAGGTAGTTCGTAATCTCATCCTGGCAGGACATGAAGTTCATGTGGTTACTGGTGCCCCAGACCACATTTTTACCACTGAAATACAGTCACCTAAACTCTTCATCAGGAAGGTGCTATTAGATATTGGAGCAGTTCAAGCAGATGCTTTGACAGTTGATCGTCTTGCGTCCTTGGA...

LOC131021381
ATGGTGGCTGGACGTGGCAGTCACTCTATCATTTGGCAGATAGCTGAAGATTATTCTCATTGCGACTTCGTTATACGTCTCCCAGGATACTGCCCAATGCCTGCTTTTCGAGATGCTGTTGATGTACCTCTTGTTGTTCGGAGATTACGCAGGTCACGGGCTGAGGTTAGGAAAGAGCTTGGAATTGGGGAAGACACGAAAGTTTTGATTTATAATTTTGGCGGGCAGCCAGCTGGGTGGAAGCTTCAGAAGAACTACCT...

Protein

2 records

下载 Protein FASTA

XP_057806533.1
MQEEMGQRPLVFAYYVSGHGFGHATRVAEVVRNLILAGHEVHVVTGAPDHIFTTEIQSPKLFIRKVLLDIGAVQADALTVDRLASLEKYVQIAVVPRAFILSTEAEWLKSINASLVVSDAVPIACQAAADAGVHAVCVTNFSWDFIYAEYVMVAGRGSHSIIWQIAEDYSHCDFVIRLPGYCPMPAFRDAVDVPLVVRRLRRSRAEVRKELGIGEDTKVLIYNFGGQPAGWKLQKNYLPDGWICLVCGASEVQELPENFM...

XP_057806534.1
MVAGRGSHSIIWQIAEDYSHCDFVIRLPGYCPMPAFRDAVDVPLVVRRLRRSRAEVRKELGIGEDTKVLIYNFGGQPAGWKLQKNYLPDGWICLVCGASEVQELPENFMKLSKDVYTPDFIAASDCMLGKIGYGTVSEALAYKVPFIFVRRDYFNEEPFVRNMLECYQCGVEIIRRDLLTGRWAPYIKHAISLRPCYDADTNGGEVVAHILQDTALGKNVTPSKLSGSRRLQDAIVLGYQLQRVSGKDIDVPGWYALAQD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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