当前解析结果
SmilChr04G002242| 统一新 Gene ID | SmilChr04G002242 |
|---|---|
| 名称 | SmilChr04G002242 |
| 描述 | DNA (cytosine-5)-methyltransferase 1B-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 36210406 - 36218365 / + |
| NCBI Gene ID | LOC131021387 |
|---|---|
| GeneID | 131021387 |
| locus_tag | - |
| NCBI Name | LOC131021387 |
| 原始查询 | LOC131021387 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DNA (cytosine-5)-methyltransferase 1B-like |
| 产物 | DNA (cytosine-5)-methyltransferase 1B-like |
| Arabidopsis | AT5G49160 (MET1)methyltransferase 1 [Source:NCBI gene (formerly Entrezgene);Acc:834975] identity=60.1; qcov=0.997; evalue=0; confidence=high |
| Rice | Os07g0182900 (MET1B)- identity=60.1; qcov=0.992; evalue=0; confidence=high |
| GO | GO:0003682 (chromatin binding); GO:0003886 (DNA (cytosine-5-)-methyltransferase activity); GO:0005634 (nucleus); GO:0090116 (GO:0090116) |
| KEGG | smil00270 (Cysteine and methionine metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00145 (DNA_methylase); PF01426 (BAH); PF12047 (DNMT1-RFD) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021387 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057806538.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057806538.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057806538.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057806538.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057806538.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:36212100 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr4:36212390 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C47 |
Chr4:36212456 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B23,D8 |
Chr4:36212647 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B124,B88,D4 |
Chr4:36212852 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B124,B88,D4 |
Chr4:36213838 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A23,B115,B69,B78,C83 |
Chr4:36214714 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr4:36214738 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr4:36214790 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr4:36214947 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr4:36215071 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B124,B44,B88,D4 |
Chr4:36215100 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B86 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057806538.1PF12047
DNMT1-RFD 72-205 aa
PF12047
DNMT1-RFD 376-528 aa
PF01426
BAH 728-856 aa
PF01426
BAH 897-1036 aa
PF00145
DNA_methylase 1165-1509 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806538.1 |
Pfam | PF12047 |
DNMT1-RFD | Domain | 72 | 205 | 1.3e-78 | 262.7 | Cytosine specific DNA methyltransferase replication foci domain |
XP_057806538.1 |
Pfam | PF12047 |
DNMT1-RFD | Domain | 376 | 528 | 1.3e-78 | 262.7 | Cytosine specific DNA methyltransferase replication foci domain |
XP_057806538.1 |
Pfam | PF01426 |
BAH | Domain | 728 | 856 | 7e-41 | 139.6 | BAH domain |
XP_057806538.1 |
Pfam | PF01426 |
BAH | Domain | 897 | 1036 | 7e-41 | 139.6 | BAH domain |
XP_057806538.1 |
Pfam | PF00145 |
DNA_methylase | Domain | 1165 | 1509 | 6.5e-50 | 171.1 | C-5 cytosine-specific DNA methylase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。