Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002265`

染色体: Chr04 坐标: 36636975-36642906 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002265`
名称	SmilChr04G002265
描述	light-mediated development protein DET1
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	36636975 - 36642906 / `+`

ID 对照

NCBI Gene ID	`LOC131021408`
GeneID	`131021408`
locus_tag	`-`
NCBI Name	`LOC131021408`
原始查询	`LOC131021408`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	light-mediated development protein DET1
产物	light-mediated development protein DET1
Arabidopsis	`AT4G10180` (DET1) light-mediated development protein 1 / deetiolated1 (DET1) [Source:NCBI gene (formerly Entrezgene);Acc:826609] identity=69.1; qcov=1.03; evalue=0; confidence=high
Rice	`Os01g0104600` (OsDET1) - identity=66.6; qcov=1; evalue=0; confidence=high
GO	GO:0005634 (nucleus); GO:0005975 (carbohydrate metabolic process); GO:0016567 (protein ubiquitination); GO:0031461 (cullin-RING ubiquitin ligase complex); GO:0031625 (ubiquitin protein ligase binding); GO:0032436 (positive regulation of proteasomal ubiquitin-dependent protein catabolic process); GO:1990756 (ubiquitin-like ligase-substrate adaptor activity)
KEGG	smil04120 (Ubiquitin mediated proteolysis - Salvia miltiorrhiza (redroot sage))
Pfam	PF09737 (Det1)
InterPro	-
eggNOG	-
NR	GeneID:131021408

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057806577.1`
2	Cytoplasmic vesicle	细胞质囊泡	0.80000	`XP_057806577.1`
3	Autophagosome	Autophagosome	0.60000	`XP_057806578.1`
4	Autophagic vesicle	Autophagic vesicle	0.40000	`XP_057806577.1`
5	Cell projection	细胞突起	0.20000	`XP_057806577.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:36637277`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr4:36637280`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr4:36638580`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B27
`Chr4:36638817`	`G`	`GT`	1bp_insertion	frameshift_variant	5	B102,B118,B24,B38,B58
`Chr4:36638817`	`G`	`GT`	1bp_insertion	CDS_variant	5	B102,B118,B24,B38,B58
`Chr4:36638825`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B102,B118,B24,B38,B58
`Chr4:36640538`	`TTC`	`T`	2bp_deletion	frameshift_variant	1	C9
`Chr4:36640538`	`TTC`	`T`	2bp_deletion	CDS_variant	1	C9
`Chr4:36642721`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B124,B27,B79,B88

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806577.1

531 aa

266

531

Det1

PF09737 Det1 121-531 aa

XP_057806578.1

425 aa

212

425

Det1

PF09737 Det1 15-425 aa

XP_057806579.1

425 aa

212

425

Det1

PF09737 Det1 15-425 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806577.1`	Pfam	`PF09737`	Det1	Repeat	121	531	4.7e-146	487.8	De-etiolated protein 1 Det1
`XP_057806578.1`	Pfam	`PF09737`	Det1	Repeat	15	425	2.3e-146	488.8	De-etiolated protein 1 Det1
`XP_057806579.1`	Pfam	`PF09737`	Det1	Repeat	15	425	2.3e-146	488.8	De-etiolated protein 1 Det1

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057950594.1
ACATACATGCAGCCTTTCCTCACTACTAATAGTAATATAATCGTCTCTCTCTCTCTGTCTCTCTCACACACACACACATTCATCTCCTCTCTCTAACTTACCCCCTCTCGTCTTCCTGTATTCGCTCCATTCAAATTCCCCACCCCAAAAACCCCCACTCTCAAACTCAGGCAAAATACTGTCTCCACATGGTTTGGAAAAACAAATAAGGAGGAAGAATTGGGATCGTGTTCCTACTTAATGTTTAGAAGCAACAATGT...

XM_057950595.1
AATTCTTGTGATTTTTTAGGTCCATTGTGCCAGACGGTTTTATGAGAACATAGTTCCATGTCATACTATATATGACGTTGAATGCCCTGACGTTCTATTTCGTAAGTTCAGTGACGATGGAAACTACCTTGTAACCTTCAGCAGGAATCATCAGGATCTCGTTGTTTACAGACCCACTTGGCTGTCATTTTCGTGCAGAGAAGACGATTGTCTTAATCATGATCTTCCTCCTAAAGCCAGCAAATTCGAGAGTTTTTTTA...

CDS

3 records

下载 CDS FASTA

LOC131021408
ATGTTTAGAAGCAACAATGTGGCGGCCCGAATTTTCGAGCGCCAGATTTCTACTCCTGCTCCCGGCACCTCTGTCCATTGTGCCAGACGGTTTTATGAGAACATAGTTCCATGTCATACTATATATGACGTTGAATGCCCTGACGTTCTATTTCGTAAGTTCAGTGACGATGGAAACTACCTTGTAACCTTCAGCAGGAATCATCAGGATCTCGTTGTTTACAGACCCACTTGGCTGTCATTTTCGTGCAGAGAAGACGA...

LOC131021408
ATGTACTGCGTCACTCTTGCTGCCAGTGGTGAGCTTATATGCAAAGATTTCTTCCTGTACTCAGAAAAAAATCAATTTGGAATATTTGCAACTTCAACTGCACAAATTCATGATGCACCTGCTGTTGGAGGTGCAATTCAAGGAATCCCATCAATTGAAAAAATAACCTTTCACCTTGTAAGATTGGAAGATGGAGTTATACTTGATGAGAGGGTTTTCTGCAATGATTATATTAACTTGGCGCATAGCATGGGTGTTTT...

Protein

3 records

下载 Protein FASTA

XP_057806577.1
MFRSNNVAARIFERQISTPAPGTSVHCARRFYENIVPCHTIYDVECPDVLFRKFSDDGNYLVTFSRNHQDLVVYRPTWLSFSCREDDCLNHDLPPKASKFESFFTQMYCVTLAASGELICKDFFLYSEKNQFGIFATSTAQIHDAPAVGGAIQGIPSIEKITFHLVRLEDGVILDERVFCNDYINLAHSMGVFLYDDLVAIVSLRYQRIHILQIRDSGNLVDVRSIGEYCREDDELFLNSSAQGMTIADRNTAHNIGNGL...

XP_057806578.1
MYCVTLAASGELICKDFFLYSEKNQFGIFATSTAQIHDAPAVGGAIQGIPSIEKITFHLVRLEDGVILDERVFCNDYINLAHSMGVFLYDDLVAIVSLRYQRIHILQIRDSGNLVDVRSIGEYCREDDELFLNSSAQGMTIADRNTAHNIGNGLDNIHHMPETSFLSGLKQRLLSFILRGIWNEEHDPTSRMQCLKKKFYFHFQDYADLVIWKVQFLDRHHLLIKFGSVDGGVARNTDNHPAFFAVYNMETTEIISFYQN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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