当前解析结果
SmilChr04G002314| 统一新 Gene ID | SmilChr04G002314 |
|---|---|
| 名称 | SmilChr04G002314 |
| 描述 | putative E3 ubiquitin-protein ligase LIN |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 37443532 - 37449976 / - |
| NCBI Gene ID | LOC131021454 |
|---|---|
| GeneID | 131021454 |
| locus_tag | - |
| NCBI Name | LOC131021454 |
| 原始查询 | LOC131021454 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative E3 ubiquitin-protein ligase LIN |
| 产物 | putative E3 ubiquitin-protein ligase LIN |
| Arabidopsis | AT3G06880 (AT3G06880)Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819873] identity=26.6; qcov=0.635; evalue=4.15e-71; confidence=low |
| Rice | Os01g0229700 (OsWD40-9)- identity=49.3; qcov=0.3; evalue=3.06e-98; confidence=low |
| GO | GO:0004842 (ubiquitin-protein transferase activity); GO:0005515 (protein binding); GO:0016567 (protein ubiquitination) |
| KEGG | - |
| Pfam | PF00400 (WD40); PF04564 (U-box); PF23568 (ARM_LIN); PF23628 (ARM_LIN_C); PF23654 (ARM_LIN_2nd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021454 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.60000 | XP_057806629.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057806629.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057806629.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057806629.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057806629.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:37444381 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr4:37444404 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C57,C71 |
Chr4:37444418 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr4:37445840 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B62 |
Chr4:37446070 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr4:37446220 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B115,B65,B78 |
Chr4:37446467 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B52 |
Chr4:37446876 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
Chr4:37449145 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B4 |
Chr4:37449145 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B4 |
Chr4:37449257 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
Chr4:37449327 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A8,B5,B84,C22,C74 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057806629.1PF23568
ARM_LIN 101-220 aa
PF04564
U-box 347-418 aa
PF23654
ARM_LIN_2nd 436-594 aa
PF23628
ARM_LIN_C 606-959 aa
PF00400
WD40 1016-1052 aa
PF00400
WD40 1226-1260 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806629.1 |
Pfam | PF23568 |
ARM_LIN | Repeat | 101 | 220 | 1.3e-16 | 61.3 | E3 ubiquitin-protein ligase LIN-like, ARM repeat |
XP_057806629.1 |
Pfam | PF04564 |
U-box | Domain | 347 | 418 | 5.2e-16 | 59.3 | U-box domain |
XP_057806629.1 |
Pfam | PF23654 |
ARM_LIN_2nd | Repeat | 436 | 594 | 1.1e-49 | 169.0 | E3 ubiquitin-protein ligase LIN-like, ARM repeat |
XP_057806629.1 |
Pfam | PF23628 |
ARM_LIN_C | Repeat | 606 | 959 | 2.8e-139 | 464.9 | Putative E3 ubiquitin-protein ligase LIN, ARM-like domain |
XP_057806629.1 |
Pfam | PF00400 |
WD40 | Repeat | 1016 | 1052 | 1.8e-14 | 54.2 | WD domain, G-beta repeat |
XP_057806629.1 |
Pfam | PF00400 |
WD40 | Repeat | 1226 | 1260 | 1.8e-14 | 54.2 | WD domain, G-beta repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。