当前解析结果
SmilChr04G002328| 统一新 Gene ID | SmilChr04G002328 |
|---|---|
| 名称 | SmilChr04G002328 |
| 描述 | GCN5-related N-acetyltransferase 6, chloroplastic-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 37586111 - 37596932 / + |
| NCBI Gene ID | LOC131021466 |
|---|---|
| GeneID | 131021466 |
| locus_tag | - |
| NCBI Name | LOC131021466 |
| 原始查询 | LOC131021466 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | GCN5-related N-acetyltransferase 6, chloroplastic-like |
| 产物 | GCN5-related N-acetyltransferase 6%2C chloroplastic-like |
| Arabidopsis | AT2G06025 (AT2G06025)Acyl-CoA N-acyltransferases (NAT) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:815157] identity=55.7; qcov=0.786; evalue=1.28e-57; confidence=high |
| Rice | Os03g0177000- identity=47.5; qcov=0.786; evalue=9.03e-42; confidence=medium |
| GO | GO:0016747 (acyltransferase activity, transferring groups other than amino-acyl groups) |
| KEGG | - |
| Pfam | PF00583 (Acetyltransf_1); PF08445 (FR47); PF13302 (Acetyltransf_3); PF13508 (Acetyltransf_7); PF13673 (Acetyltransf_10) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021466 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057806641.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.80000 | XP_057806641.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057806641.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057806641.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057806641.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:37586393 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B112,C57,D3 |
Chr4:37596061 |
C |
T |
EMS_canonical_SNV | stop_gained | 40 | A16,A23,A3,B10,B103,B107,B110,B112,B113,B115,B126,B133,B136,B139,B15,B17,B27,B42,B43,B5,B51,B52,B57,B64,B66,B75,B84,C17,C22,C27,C40,C42,C49,C55,C63,C74,C87,C9,D2,D7 |
Chr4:37596075 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B135,C37 |
Chr4:37596078 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B40,C77 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057806641.1PF00583
Acetyltransf_1 167-224 aa
PF13508
Acetyltransf_7 167-225 aa
PF08445
FR47 167-229 aa
PF13673
Acetyltransf_10 167-229 aa
PF13302
Acetyltransf_3 173-225 aa
XP_057806642.1PF00583
Acetyltransf_1 166-223 aa
PF13508
Acetyltransf_7 166-224 aa
PF08445
FR47 166-228 aa
PF13673
Acetyltransf_10 166-228 aa
PF13302
Acetyltransf_3 172-224 aa
XP_057806644.1PF00583
Acetyltransf_1 167-222 aa
PF13508
Acetyltransf_7 167-223 aa
PF08445
FR47 167-227 aa
PF13673
Acetyltransf_10 167-227 aa
XP_057806646.1PF00583
Acetyltransf_1 167-201 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806641.1 |
Pfam | PF00583 |
Acetyltransf_1 | Family | 167 | 224 | 4e-13 | 50.4 | Acetyltransferase (GNAT) family |
XP_057806641.1 |
Pfam | PF13508 |
Acetyltransf_7 | Domain | 167 | 225 | 4.1e-10 | 40.6 | Acetyltransferase (GNAT) domain |
XP_057806641.1 |
Pfam | PF08445 |
FR47 | Family | 167 | 229 | 2.4e-09 | 37.8 | FR47-like protein |
XP_057806641.1 |
Pfam | PF13673 |
Acetyltransf_10 | Domain | 167 | 229 | 5.5e-09 | 36.8 | Acetyltransferase (GNAT) domain |
XP_057806641.1 |
Pfam | PF13302 |
Acetyltransf_3 | Domain | 173 | 225 | 6.7e-06 | 27.6 | Acetyltransferase (GNAT) domain |
XP_057806642.1 |
Pfam | PF00583 |
Acetyltransf_1 | Family | 166 | 223 | 4e-13 | 50.4 | Acetyltransferase (GNAT) family |
XP_057806642.1 |
Pfam | PF13508 |
Acetyltransf_7 | Domain | 166 | 224 | 4.1e-10 | 40.6 | Acetyltransferase (GNAT) domain |
XP_057806642.1 |
Pfam | PF08445 |
FR47 | Family | 166 | 228 | 2.6e-09 | 37.6 | FR47-like protein |
XP_057806642.1 |
Pfam | PF13673 |
Acetyltransf_10 | Domain | 166 | 228 | 6e-09 | 36.7 | Acetyltransferase (GNAT) domain |
XP_057806642.1 |
Pfam | PF13302 |
Acetyltransf_3 | Domain | 172 | 224 | 7.6e-06 | 27.4 | Acetyltransferase (GNAT) domain |
XP_057806644.1 |
Pfam | PF00583 |
Acetyltransf_1 | Family | 167 | 222 | 3.4e-11 | 44.2 | Acetyltransferase (GNAT) family |
XP_057806644.1 |
Pfam | PF13508 |
Acetyltransf_7 | Domain | 167 | 223 | 1.7e-09 | 38.7 | Acetyltransferase (GNAT) domain |
XP_057806644.1 |
Pfam | PF08445 |
FR47 | Family | 167 | 227 | 3.7e-09 | 37.2 | FR47-like protein |
XP_057806644.1 |
Pfam | PF13673 |
Acetyltransf_10 | Domain | 167 | 227 | 1.9e-08 | 35.1 | Acetyltransferase (GNAT) domain |
XP_057806646.1 |
Pfam | PF00583 |
Acetyltransf_1 | Family | 167 | 201 | 0.00012 | 23.1 | Acetyltransferase (GNAT) family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。