Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr01G001878`

Chromosome: Chr01 Coordinates: 33808303-33811676 Strand: + Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr01G001878`
Name	SmilChr01G001878
Description	uncharacterized SmilChr01G001878
Chromosome / SeqID	Chr01 / NC_080387.1
Coordinates and Strand	33808303 - 33811676 / `+`

ID Mapping

NCBI Gene ID	`LOC131021486`
GeneID	`131021486`
locus_tag	`-`
NCBI Name	`LOC131021486`
Original query	`LOC131021486`

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Functional Annotation

Source	GFF basic annotation; Arabidopsis/Rice homolog
Description	golgin family A protein [Source:NCBI gene (formerly Entrezgene);Acc:820332]; symbol=AT3G11590; hit=AT3G11590; species=arabidopsis; confidence=high
Product	golgin family A protein [Source:NCBI gene (formerly Entrezgene);Acc:820332]; symbol=AT3G11590; hit=AT3G11590; species=arabidopsis; confidence=high
Arabidopsis	`AT3G11590` (AT3G11590) golgin family A protein [Source:NCBI gene (formerly Entrezgene);Acc:820332] identity=45.4; qcov=0.877; evalue=1.01e-113; confidence=high
Rice	`Os04g0382800` - identity=36.8; qcov=0.668; evalue=1.08e-60; confidence=medium
GO	-
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131021486

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Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057806680.1`
2	Nucleus	细胞核	0.60000	`XP_057806680.1`
3	Nucleus membrane	核膜	0.20000	`XP_057806680.1`
4	Cytoskeleton	细胞骨架	0.20000	`XP_057806680.1`
5	Cytosol	细胞质基质	0.20000	`XP_057806680.1`

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EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr1:33808974`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B77,D7
`Chr1:33809267`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D9
`Chr1:33809338`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B17,B45,C25
`Chr1:33809566`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:33810100`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B20
`Chr1:33810630`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B112,C47,C63
`Chr1:33811380`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B84,C30

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Predicted Protein Domains

This gene has no available Pfam domain hit in the current release.

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cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

4 records

Download cDNA FASTA

XM_057950697.1
CTTCTCTCTCTCTTTCACAAACTTTTCCTTTTCCATGAAAAAGGCTACCAGATTCACTCCTTGAAAGCTCTCTCTCTCTCTCTCACCGCTTTTCCCAACTGCACTTGAAGATGAAGCTTTGACAGTTGCCTCATTCGCAACTACACTGTCACATGTATCTTCTACACTTTTCCTTTCCCTCTCTGGAATTTTGAAAATCAGAGCCCAACTTTTCGCAAAGGGGGCTCAAATTTGCATGCCAAACCCATCTCAACATCATT...

XM_057950701.1
CTTCTCTCTCTCTTTCACAAACTTTTCCTTTTCCATGAAAAAGGCTACCAGATTCACTCCTTGAAAGCTCTCTCTCTCTCTCTCACCGCTTTTCCCAACTGCACTTGAAGATGAAGCTTTGACAGTTGCCTCATTCGCAACTACACTGTCACATGTATCTTCTACACTTTTCCTTTCCCTCTCTGGAATTTTGAAAATCAGAGCCCAACTTTTCGCAAAGGGGGCTCAAATTTGCATGCCAAACCCATCTCAACATCATT...

CDS

4 records

Download CDS FASTA

LOC131021486
ATGCCAAGGCAGAATTTGATCAATGTTGATGTCAAAATTGGAGGGAGGAAATGCAAAGTGAGGAAGAGGGGTTGTTCATCGTCGTCTTCCTCATCGTTGGTGCAGAATAACCGGTTGAAGCGCGCTTTTTTGGTGGGGAAACGAGTGGGATCGAGCACCCCTGTTCCGAGGTGGAAGATGATGAGCTCCAGATCACCATCAGTGGAGAGTGACAAGGCGGCAACTCTAAAGTATTTGGCGACAAGGGGTGGCGAGAAGGC...

Protein

4 records

Download Protein FASTA

XP_057806680.1
MPRQNLINVDVKIGGRKCKVRKRGCSSSSSSSLVQNNRLKRAFLVGKRVGSSTPVPRWKMMSSRSPSVESDKAATLKYLATRGGEKARELSISARKLAATLWEIDGMPSPRVRRDNFDDRRSAVGGVVRLEEAKSGSTALVLSDLFRSPVAEGMEPLPPKMASHRRRASASSQKLLQVDSGLGGTKSPHNCLVETMQVDQVQNHARSPCRQVVGTKNRLQDVYNGLITSKELLKVMSRVSHLEEQNSTRLSLFSALKFEL...

XP_057806684.1
MPRQNLINVDVKIGGRKCKVRKRGCSSSSSSSLVQNNRLKRAFLVGKRVGSSTPVPRWKMMSSRSPSVESDKAATLKYLATRGGEKARELSISARKLAATLWEIDGMPSPRVRRDNFDDRRSAVGGVVRLEEAKSGSTALVLSDLFRSPVAEGMEPLPPKMASHRRRASASSQKLLQVDSGLGGTKSPHNCLVETMQVDQVQNHARSPCRQVVGTKNRLQDVYNGLITSKELLKVMSRVSHLEEQNSTRLSLFSALKFEL...

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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