Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002349`

染色体: Chr04 坐标: 37922414-37923323 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002349`
名称	SmilChr04G002349
描述	calmodulin-like protein 30
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	37922414 - 37923323 / `+`

ID 对照

NCBI Gene ID	`LOC131021488`
GeneID	`131021488`
locus_tag	`-`
NCBI Name	`LOC131021488`
原始查询	`LOC131021488`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	calmodulin-like protein 30
产物	calmodulin-like protein 30
Arabidopsis	`AT2G15680` (CML30) Calcium-binding EF-hand family protein [Source:NCBI gene (formerly Entrezgene);Acc:816061] identity=45.5; qcov=1.01; evalue=1.78e-47; confidence=medium
Rice	`Os01g0949500` (OsCML10) - identity=46.4; qcov=0.968; evalue=9.88e-42; confidence=medium
GO	GO:0005509 (calcium ion binding)
KEGG	smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00036 (EF-hand_1); PF13202 (EF-hand_5); PF13405 (EF-hand_6); PF13499 (EF-hand_7); PF13833 (EF-hand_8)
InterPro	-
eggNOG	-
NR	GeneID:131021488

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057806679.1`
2	Cytoplasm	细胞质	0.20000	`XP_057806679.1`
3	Cytosol	细胞质基质	0.20000	`XP_057806679.1`
4	Nucleus	细胞核	0.00000	`XP_057806679.1`
5	Chromosome	染色体	0.00000	`XP_057806679.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:37922596`	`AG`	`A`	1bp_deletion	frameshift_variant	14	A6,B11,B113,B114,B47,B72,B73,B80,B97,C3,C44,C52,C64,C66
`Chr4:37922601`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B51,C46
`Chr4:37922660`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr4:37922673`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B1,B54,C35
`Chr4:37922682`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr4:37922684`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr4:37922718`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr4:37922745`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:37922754`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr4:37922808`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B124,B79
`Chr4:37922859`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B20
`Chr4:37922982`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B95

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806679.1

185 aa

185

EF-hand_7

EF-hand_8

EF-hand_1

EF-hand_6

EF-hand_7

EF-hand_5

EF-hand_8

EF-hand_1

EF-hand_5

EF-hand_8

EF-hand_7

EF-hand_1

EF-hand_6

EF-hand_5

EF-hand_8

EF-hand_1

EF-hand_5

PF13499 EF-hand_7 37-71 aa PF13833 EF-hand_8 42-72 aa PF00036 EF-hand_1 46-72 aa PF13405 EF-hand_6 46-75 aa PF13499 EF-hand_7 46-107 aa PF13202 EF-hand_5 50-69 aa PF13833 EF-hand_8 70-104 aa PF00036 EF-hand_1 85-106 aa PF13202 EF-hand_5 85-106 aa PF13833 EF-hand_8 115-144 aa PF13499 EF-hand_7 116-179 aa PF00036 EF-hand_1 117-145 aa PF13405 EF-hand_6 117-146 aa PF13202 EF-hand_5 118-142 aa PF13833 EF-hand_8 136-180 aa PF00036 EF-hand_1 154-179 aa PF13202 EF-hand_5 161-178 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806679.1`	Pfam	`PF13499`	EF-hand_7	Domain	37	71	2.8e-35	121.2	EF-hand domain pair
`XP_057806679.1`	Pfam	`PF13833`	EF-hand_8	Domain	42	72	1.5e-21	76.6	EF-hand domain pair
`XP_057806679.1`	Pfam	`PF00036`	EF-hand_1	Domain	46	72	6.1e-34	113.8	EF hand domain
`XP_057806679.1`	Pfam	`PF13405`	EF-hand_6	Domain	46	75	3e-29	98.6	EF-hand domain
`XP_057806679.1`	Pfam	`PF13499`	EF-hand_7	Domain	46	107	2.8e-35	121.2	EF-hand domain pair
`XP_057806679.1`	Pfam	`PF13202`	EF-hand_5	Domain	50	69	3.7e-30	102.7	EF hand
`XP_057806679.1`	Pfam	`PF13833`	EF-hand_8	Domain	70	104	1.5e-21	76.6	EF-hand domain pair
`XP_057806679.1`	Pfam	`PF00036`	EF-hand_1	Domain	85	106	6.1e-34	113.8	EF hand domain
`XP_057806679.1`	Pfam	`PF13202`	EF-hand_5	Domain	85	106	3.7e-30	102.7	EF hand
`XP_057806679.1`	Pfam	`PF13833`	EF-hand_8	Domain	115	144	1.5e-21	76.6	EF-hand domain pair
`XP_057806679.1`	Pfam	`PF13499`	EF-hand_7	Domain	116	179	2.8e-35	121.2	EF-hand domain pair
`XP_057806679.1`	Pfam	`PF00036`	EF-hand_1	Domain	117	145	6.1e-34	113.8	EF hand domain
`XP_057806679.1`	Pfam	`PF13405`	EF-hand_6	Domain	117	146	3e-29	98.6	EF-hand domain
`XP_057806679.1`	Pfam	`PF13202`	EF-hand_5	Domain	118	142	3.7e-30	102.7	EF hand
`XP_057806679.1`	Pfam	`PF13833`	EF-hand_8	Domain	136	180	1.5e-21	76.6	EF-hand domain pair
`XP_057806679.1`	Pfam	`PF00036`	EF-hand_1	Domain	154	179	6.1e-34	113.8	EF hand domain
`XP_057806679.1`	Pfam	`PF13202`	EF-hand_5	Domain	161	178	3.7e-30	102.7	EF hand

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057950696.1
GAATCTTAAGAGGCCCGCATCGAAAAGTATGAACAATGTATATGAGATACTTTAGAATACAAATTCCGTAGATACACTTAAACCTATATAAGTGTGACGCCTCCATTGATGTTTCACAACATCTTTGGTTGTATATATATTTTCCACAGCATAAAGCCAGAAATTAATCCATGTCGAAACTCAGCTTCCTCGGTCTCCACCGCAGTAATTCAAAGAAACCCTCATCTCCCAAAGCAACCATTCGCTCAAAAGAAACCCAC...

CDS

1 records

下载 CDS FASTA

LOC131021488
ATGTCGAAACTCAGCTTCCTCGGTCTCCACCGCAGTAATTCAAAGAAACCCTCATCTCCCAAAGCAACCATTCGCTCAAAAGAAACCCACAAATCCTCGAGCATGCGCAGCAAAAGCTTTGAGCCAAACACCGACGAAGTGAGAATGGTTTTCAACAAGTTCGACGCCAACGGCGACGGCAAGATCTCCCTTCAAGAATACATGCAAGCCCTCCGCGTCCTCGGCGGCGCCACCACCAAACGCGAGGCAGCGCAGACATT...

Protein

1 records

下载 Protein FASTA

XP_057806679.1
MSKLSFLGLHRSNSKKPSSPKATIRSKETHKSSSMRSKSFEPNTDEVRMVFNKFDANGDGKISLQEYMQALRVLGGATTKREAAQTFQAADADGDGFIDLDEFTKLYGSDADAKSSEIQSAFRVFDCDGDGKISAEELMEVLRRMGERPTLEGCKKMIRGVDRDGDGLIDMDEFTNMMKQNIKTA

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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