Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002353`

染色体: Chr04 坐标: 38009068-38024714 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002353`
名称	SmilChr04G002353
描述	uncharacterized SmilChr04G002353
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	38009068 - 38024714 / `+`

ID 对照

NCBI Gene ID	`LOC131021493`
GeneID	`131021493`
locus_tag	`-`
NCBI Name	`LOC131021493`
原始查询	`LOC131021493`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819671]; symbol=LRS1; hit=AT3G05090; species=arabidopsis; confidence=high
产物	Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819671]; symbol=LRS1; hit=AT3G05090; species=arabidopsis; confidence=high
Arabidopsis	`AT3G05090` (LRS1) Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819671] identity=72.5; qcov=0.995; evalue=0; confidence=high
Rice	`Os12g0165000` (OsWD40-194) - identity=69.9; qcov=0.995; evalue=0; confidence=high
GO	GO:0000724 (double-strand break repair via homologous recombination); GO:0016579 (protein deubiquitination); GO:0043130 (ubiquitin binding)
KEGG	smil03460 (Fanconi anemia pathway - Salvia miltiorrhiza (redroot sage))
Pfam	PF00400 (WD40); PF11816 (Ubl_WDR48-Bun107)
InterPro	-
eggNOG	-
NR	GeneID:131021493

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057806682.1`
2	Cytoplasm	细胞质	0.80000	`XP_057806682.1`
3	Trans-golgi network	Trans-golgi network	0.20000	`XP_057806682.1`
4	Vesicle	囊泡	0.20000	`XP_057806682.1`
5	Cell projection	细胞突起	0.20000	`XP_057806682.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:38014317`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	C16,C62,D3,D4
`Chr4:38014531`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:38014532`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B125,C41
`Chr4:38014711`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A23,B128,B18,B69,C81
`Chr4:38015022`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr4:38018125`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	C16,C62,D3,D4
`Chr4:38020826`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr4:38024079`	`G`	`GGT`	2bp_insertion	frameshift_variant	4	B100,B59,B81,C6
`Chr4:38024079`	`G`	`GGT`	2bp_insertion	CDS_variant	4	B100,B59,B81,C6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806682.1

776 aa

388

776

WD40

Ubl_WDR48-Bun107

PF00400 WD40 41-75 aa PF00400 WD40 85-119 aa PF00400 WD40 124-163 aa PF00400 WD40 222-253 aa PF00400 WD40 259-295 aa PF00400 WD40 300-335 aa PF11816 Ubl_WDR48-Bun107 620-766 aa

XP_057806683.1

771 aa

386

771

WD40

Ubl_WDR48-Bun107

PF00400 WD40 41-75 aa PF00400 WD40 85-119 aa PF00400 WD40 124-163 aa PF00400 WD40 222-253 aa PF00400 WD40 259-295 aa PF00400 WD40 300-335 aa PF11816 Ubl_WDR48-Bun107 620-766 aa

XP_057806685.1

771 aa

386

771

WD40

Ubl_WDR48-Bun107

PF00400 WD40 41-75 aa PF00400 WD40 85-119 aa PF00400 WD40 124-163 aa PF00400 WD40 222-253 aa PF00400 WD40 259-295 aa PF00400 WD40 300-335 aa PF11816 Ubl_WDR48-Bun107 620-766 aa

XP_057806686.1

768 aa

384

768

WD40

Ubl_WDR48-Bun107

PF00400 WD40 33-67 aa PF00400 WD40 77-111 aa PF00400 WD40 116-155 aa PF00400 WD40 214-245 aa PF00400 WD40 251-287 aa PF00400 WD40 292-327 aa PF11816 Ubl_WDR48-Bun107 612-758 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806682.1`	Pfam	`PF00400`	WD40	Repeat	41	75	3.5e-35	119.6	WD domain, G-beta repeat
`XP_057806682.1`	Pfam	`PF00400`	WD40	Repeat	85	119	3.5e-35	119.6	WD domain, G-beta repeat
`XP_057806682.1`	Pfam	`PF00400`	WD40	Repeat	124	163	3.5e-35	119.6	WD domain, G-beta repeat
`XP_057806682.1`	Pfam	`PF00400`	WD40	Repeat	222	253	3.5e-35	119.6	WD domain, G-beta repeat
`XP_057806682.1`	Pfam	`PF00400`	WD40	Repeat	259	295	3.5e-35	119.6	WD domain, G-beta repeat
`XP_057806682.1`	Pfam	`PF00400`	WD40	Repeat	300	335	3.5e-35	119.6	WD domain, G-beta repeat
`XP_057806682.1`	Pfam	`PF11816`	Ubl_WDR48-Bun107	Domain	620	766	1.1e-30	107.4	WDR48/Bun107, ubiquitin-like domain
`XP_057806683.1`	Pfam	`PF00400`	WD40	Repeat	41	75	3.3e-35	119.7	WD domain, G-beta repeat
`XP_057806683.1`	Pfam	`PF00400`	WD40	Repeat	85	119	3.3e-35	119.7	WD domain, G-beta repeat
`XP_057806683.1`	Pfam	`PF00400`	WD40	Repeat	124	163	3.3e-35	119.7	WD domain, G-beta repeat
`XP_057806683.1`	Pfam	`PF00400`	WD40	Repeat	222	253	3.3e-35	119.7	WD domain, G-beta repeat
`XP_057806683.1`	Pfam	`PF00400`	WD40	Repeat	259	295	3.3e-35	119.7	WD domain, G-beta repeat
`XP_057806683.1`	Pfam	`PF00400`	WD40	Repeat	300	335	3.3e-35	119.7	WD domain, G-beta repeat
`XP_057806683.1`	Pfam	`PF11816`	Ubl_WDR48-Bun107	Domain	620	766	1.1e-30	107.4	WDR48/Bun107, ubiquitin-like domain
`XP_057806685.1`	Pfam	`PF00400`	WD40	Repeat	41	75	3.3e-35	119.7	WD domain, G-beta repeat
`XP_057806685.1`	Pfam	`PF00400`	WD40	Repeat	85	119	3.3e-35	119.7	WD domain, G-beta repeat
`XP_057806685.1`	Pfam	`PF00400`	WD40	Repeat	124	163	3.3e-35	119.7	WD domain, G-beta repeat
`XP_057806685.1`	Pfam	`PF00400`	WD40	Repeat	222	253	3.3e-35	119.7	WD domain, G-beta repeat
`XP_057806685.1`	Pfam	`PF00400`	WD40	Repeat	259	295	3.3e-35	119.7	WD domain, G-beta repeat
`XP_057806685.1`	Pfam	`PF00400`	WD40	Repeat	300	335	3.3e-35	119.7	WD domain, G-beta repeat
`XP_057806685.1`	Pfam	`PF11816`	Ubl_WDR48-Bun107	Domain	620	766	1.1e-30	107.4	WDR48/Bun107, ubiquitin-like domain
`XP_057806686.1`	Pfam	`PF00400`	WD40	Repeat	33	67	3.2e-35	119.8	WD domain, G-beta repeat
`XP_057806686.1`	Pfam	`PF00400`	WD40	Repeat	77	111	3.2e-35	119.8	WD domain, G-beta repeat
`XP_057806686.1`	Pfam	`PF00400`	WD40	Repeat	116	155	3.2e-35	119.8	WD domain, G-beta repeat
`XP_057806686.1`	Pfam	`PF00400`	WD40	Repeat	214	245	3.2e-35	119.8	WD domain, G-beta repeat
`XP_057806686.1`	Pfam	`PF00400`	WD40	Repeat	251	287	3.2e-35	119.8	WD domain, G-beta repeat
`XP_057806686.1`	Pfam	`PF00400`	WD40	Repeat	292	327	3.2e-35	119.8	WD domain, G-beta repeat
`XP_057806686.1`	Pfam	`PF11816`	Ubl_WDR48-Bun107	Domain	612	758	1.1e-30	107.4	WDR48/Bun107, ubiquitin-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XR_009100962.1
TAACGAAATTCGGGTTTTTTTGGTTTTCCTCTTCAGAATTTCGTCCCCAATTTGGGAAAAGAAACAAACAACCCTCTCCACTTTCCTTCTCCCCTATCCCCCGTCGTCCTCCTCCGCCACGGCCGCTGCCGCCGCAGCCCTTCCGACCGCCGAACCACGTTCCTCTTAACGAACTCGAAGTATCTGTGCTTCTCTTTCATTCCACCTGTTTCTCTGCTGTCTTCGACCTCGCGTTCGACGAATCTGCCTGCGCTGACTCG...

XR_009100961.1
AACGAAATTCGGGTTTTTTTGGTTTTCCTCTTCAGAATTTCGTCCCCAATTTGGGAAAAGAAACAAACAACCCTCTCCACTTTCCTTCTCCCCTATCCCCCGTCGTCCTCCTCCGCCACGGCCGCTGCCGCCGCAGCCCTTCCGACCGCCGAACCACGTTCCTCTTAACGAACTCGAAGTATCTGTGCTTCTCTTTCATTCCACCTGTTTCTCTGCTGTCTTCGACCTCGCGTTCGACGAATCTGCCTGCGCTGACTCGT...

CDS

4 records

下载 CDS FASTA

LOC131021493
ATGATGTCTTCAGCCATTCCAGCGATGCATCGCGTTGGAAGTTCAGGAAACACATCCAATTCAGTTCGTACTCGCAAGGAAAAGAGGTTAACATATGTATTGAACGATGCAGATGATACAAAGCATTGTGCTGGCGTAAACTGCTTGGCCGTATCGAAATCTGCAGAACAAGAAGGAAGTGAGTACCTCTTCACTGGTAGTCGTGATGGCACATTGAAGAGATGGGCATTATCGGAAGATTCTGCTACTTTTTCTGCTAC...

Protein

4 records

下载 Protein FASTA

XP_057806682.1
MMSSAIPAMHRVGSSGNTSNSVRTRKEKRLTYVLNDADDTKHCAGVNCLAVSKSAEQEGSEYLFTGSRDGTLKRWALSEDSATFSATFESHVDWVNDAVLTGGNTLVSCSSDTTVKVWNCLSDGVCARTFHQHSDYVTCLAAAEKNSNVFASGGLGGEVFIWDLEASLNPVSKSSDANSDDCSTSTNGLGSLPSTSLRPINSSNNISVHATQSQGYAPIAAKGHKESVYALATNDRGTLLVSGGTEKVVRVWDPRTGSKT...

XP_057806683.1
MMSSAIPAMHRVGSSGNTSNSVRTRKEKRLTYVLNDADDTKHCAGVNCLAVSKSAEQEGSEYLFTGSRDGTLKRWALSEDSATFSATFESHVDWVNDAVLTGGNTLVSCSSDTTVKVWNCLSDGVCARTFHQHSDYVTCLAAAEKNSNVFASGGLGGEVFIWDLEASLNPVSKSSDANSDDCSTSTNGLGSLPSTSLRPINSSNNISVHATQSQGYAPIAAKGHKESVYALATNDRGTLLVSGGTEKVVRVWDPRTGSKT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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