当前解析结果
SmilChr04G002371| 统一新 Gene ID | SmilChr04G002371 |
|---|---|
| 名称 | SmilChr04G002371 |
| 描述 | uncharacterized SmilChr04G002371 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 38201250 - 38206817 / - |
| NCBI Gene ID | LOC131021504 |
|---|---|
| GeneID | 131021504 |
| locus_tag | - |
| NCBI Name | LOC131021504 |
| 原始查询 | LOC131021504 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ubiquinol-cytochrome C chaperone family protein [Source:NCBI gene (formerly Entrezgene);Acc:835197]; symbol=AT5G51220; hit=AT5G51220; species=arabidopsis; confidence=high |
| 产物 | ubiquinol-cytochrome C chaperone family protein [Source:NCBI gene (formerly Entrezgene);Acc:835197]; symbol=AT5G51220; hit=AT5G51220; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G51220 (AT5G51220)ubiquinol-cytochrome C chaperone family protein [Source:NCBI gene (formerly Entrezgene);Acc:835197] identity=61.8; qcov=0.986; evalue=8.8e-118; confidence=high |
| Rice | Os07g0490300- identity=67.7; qcov=0.785; evalue=3.65e-109; confidence=high |
| GO | GO:0005739 (mitochondrion); GO:0034551 (mitochondrial respiratory chain complex III assembly) |
| KEGG | - |
| Pfam | PF03981 (Ubiq_cyt_C_chap) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021504 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057806701.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 1.00000 | XP_057806701.1 |
| 3 | Mitochondrion inner membrane | 线粒体内膜 | 1.00000 | XP_057806701.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057806701.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057806701.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:38201725 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr4:38202488 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr4:38204162 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | C75 |
Chr4:38204162 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C75 |
Chr4:38205008 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B125,B90,B92,C87 |
Chr4:38205059 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr4:38205839 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B118,B17,B97,C77,C78 |
Chr4:38205940 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057806701.1PF03981
Ubiq_cyt_C_chap 129-270 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806701.1 |
Pfam | PF03981 |
Ubiq_cyt_C_chap | Family | 129 | 270 | 2.2e-37 | 129.0 | Ubiquinol-cytochrome C chaperone |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。