当前解析结果
SmilChr04G002406| 统一新 Gene ID | SmilChr04G002406 |
|---|---|
| 名称 | SmilChr04G002406 |
| 描述 | uncharacterized SmilChr04G002406 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 38602334 - 38609880 / + |
| NCBI Gene ID | LOC131021533 |
|---|---|
| GeneID | 131021533 |
| locus_tag | - |
| NCBI Name | LOC131021533 |
| 原始查询 | LOC131021533 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:839272]; symbol=AT1G04140; hit=AT1G04140; species=arabidopsis; confidence=high |
| 产物 | Transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:839272]; symbol=AT1G04140; hit=AT1G04140; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G04140 (AT1G04140)Transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:839272] identity=48.5; qcov=1.08; evalue=9.74e-172; confidence=high |
| Rice | Os09g0296900 (OsWD40-169)- identity=45.2; qcov=1.09; evalue=3.18e-143; confidence=high |
| GO | GO:0005515 (protein binding); GO:0006914 (autophagy); GO:0043231 (intracellular membrane-bounded organelle) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021533 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057806745.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057806745.1 |
| 3 | Cytosol | 细胞质基质 | 1.00000 | XP_057806745.1 |
| 4 | Nucleoplasm | 核质 | 0.60000 | XP_057806745.1 |
| 5 | Nuclear body | 核内小体 | 0.20000 | XP_057806745.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:38606017 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr4:38606070 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr4:38606179 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A10,B85,C50 |
Chr4:38606289 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr4:38606398 |
C |
T |
EMS_canonical_SNV | stop_gained | 14 | A1,A10,A25,B23,B30,B37,B70,B85,C21,C50,C64,C66,C8,D6 |
Chr4:38606730 |
G |
GGA |
2bp_insertion | frameshift_variant | 9 | A22,B117,B125,B35,B7,C28,C41,C49,C6 |
Chr4:38606806 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B122,B131,B54,C61,C68 |
Chr4:38606878 |
C |
T |
EMS_canonical_SNV | stop_gained | 6 | B122,B71,C32,C60,C61,C68 |
Chr4:38606879 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B105,B122,B24,B75 |
Chr4:38606934 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C11,C23,C69 |
Chr4:38607038 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr4:38608447 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C69 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。