当前解析结果
SmilChr04G002404| 统一新 Gene ID | SmilChr04G002404 |
|---|---|
| 名称 | SmilChr04G002404 |
| 描述 | peroxidase 51-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 38576734 - 38627026 / + |
| NCBI Gene ID | LOC131021534 |
|---|---|
| GeneID | 131021534 |
| locus_tag | - |
| NCBI Name | LOC131021534 |
| 原始查询 | LOC131021534 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | peroxidase 51-like |
| 产物 | peroxidase 51-like |
| Arabidopsis | AT4G37530 (AT4G37530)Peroxidase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829908] identity=68.5; qcov=0.957; evalue=4.49e-159; confidence=high |
| Rice | Os07g0115300 (prx98)- identity=65.2; qcov=0.954; evalue=1.4e-146; confidence=high |
| GO | GO:0004601 (peroxidase activity); GO:0005515 (protein binding); GO:0006914 (autophagy); GO:0006979 (response to oxidative stress); GO:0020037 (heme binding); GO:0042744 (hydrogen peroxide catabolic process); GO:0043231 (intracellular membrane-bounded organelle) |
| KEGG | - |
| Pfam | PF00141 (peroxidase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021534 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057806750.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057806750.1 |
| 3 | Cytosol | 细胞质基质 | 1.00000 | XP_057806750.1 |
| 4 | Secreted | 分泌到胞外 | 0.80000 | XP_057806753.1 |
| 5 | Nucleoplasm | 核质 | 0.80000 | XP_057806750.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:38576988 |
G |
GGA |
2bp_insertion | frameshift_variant | 1 | B41 |
Chr4:38576988 |
G |
GGA |
2bp_insertion | CDS_variant | 1 | B41 |
Chr4:38577016 |
T |
TG |
1bp_insertion | frameshift_variant | 20 | A13,A18,B11,B114,B28,B33,B8,B86,B90,B92,B93,B95,C31,C32,C4,C56,C59,C68,C84,D6 |
Chr4:38577043 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B120,B62,C79 |
Chr4:38577082 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A19,B27,B55,C23 |
Chr4:38577108 |
A |
AT |
1bp_insertion | frameshift_variant | 53 | A13,A16,A18,A19,A20,A7,B103,B106,B11,B114,B118,B126,B127,B133,B16,B21,B27,B28,B33,B34,B35,B37,B42,B43,B51,B55,B74,B8,B84,B86,B90,B92,B93,B95,C12,C15,C17,C20,C22,C23,C31,C32,C4,C51,C54,C56,C59,C62,C68,C70,C84,D1,D6 |
Chr4:38577462 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B120,B62 |
Chr4:38577554 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B50 |
Chr4:38577601 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B79,B91,C53 |
Chr4:38577758 |
C |
CA |
1bp_insertion | frameshift_variant | 6 | B36,C3,C39,C7,D10,D4 |
Chr4:38590338 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B105,B122,B24,C6 |
Chr4:38590515 |
C |
T |
EMS_canonical_SNV | stop_gained | 4 | B122,B71,C60,C61 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057806753.1PF00141
peroxidase 36-289 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806753.1 |
Pfam | PF00141 |
peroxidase | Domain | 36 | 289 | 7.3e-76 | 255.8 | Peroxidase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
8 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。