Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002419`

染色体: Chr04 坐标: 38809020-38814236 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002419`
名称	SmilChr04G002419
描述	BTB/POZ domain-containing protein NPY5-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	38809020 - 38814236 / `+`

ID 对照

NCBI Gene ID	`LOC131021544`
GeneID	`131021544`
locus_tag	`-`
NCBI Name	`LOC131021544`
原始查询	`LOC131021544`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	BTB/POZ domain-containing protein NPY5-like
产物	BTB/POZ domain-containing protein NPY5-like
Arabidopsis	`AT2G14820` (NPY2) Phototropic-responsive NPH3 family protein [Source:NCBI gene (formerly Entrezgene);Acc:815970] identity=53.1; qcov=0.933; evalue=0; confidence=high
Rice	`Os12g0583500` - identity=55.9; qcov=1.02; evalue=0; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00651 (BTB); PF03000 (NPH3)
InterPro	-
eggNOG	-
NR	GeneID:131021544

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.60000	`XP_057806760.1`
2	Nucleus	细胞核	0.40000	`XP_057806760.1`
3	Cytosol	细胞质基质	0.40000	`XP_057806760.1`
4	Cytoplasm	细胞质	0.20000	`XP_057806760.1`
5	Chromosome	染色体	0.00000	`XP_057806760.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:38812037`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B44,B7,C28
`Chr4:38812164`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B122,C32,C68
`Chr4:38812205`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B12,C11,C69
`Chr4:38812319`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C1,C3
`Chr4:38812344`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr4:38812541`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C1,C3
`Chr4:38812573`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B101,B46,C39,D4
`Chr4:38812669`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B46,C39,D4
`Chr4:38812783`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B122,C32,C68
`Chr4:38812787`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A11,B120,B62,C72
`Chr4:38813204`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B59,C81
`Chr4:38813307`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B59,C81

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806760.1

629 aa

314

629

BTB

NPH3

PF00651 BTB 28-118 aa PF03000 NPH3 211-463 aa

XP_057806761.1

629 aa

314

629

BTB

NPH3

PF00651 BTB 28-118 aa PF03000 NPH3 211-463 aa

XP_057806762.1

629 aa

314

629

BTB

NPH3

PF00651 BTB 28-118 aa PF03000 NPH3 211-463 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806760.1`	Pfam	`PF00651`	BTB	Domain	28	118	1.5e-06	29.1	BTB/POZ domain
`XP_057806760.1`	Pfam	`PF03000`	NPH3	Family	211	463	2.1e-82	277.4	NPH3 family
`XP_057806761.1`	Pfam	`PF00651`	BTB	Domain	28	118	1.5e-06	29.1	BTB/POZ domain
`XP_057806761.1`	Pfam	`PF03000`	NPH3	Family	211	463	2.1e-82	277.4	NPH3 family
`XP_057806762.1`	Pfam	`PF00651`	BTB	Domain	28	118	1.5e-06	29.1	BTB/POZ domain
`XP_057806762.1`	Pfam	`PF03000`	NPH3	Family	211	463	2.1e-82	277.4	NPH3 family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057950779.1
AAGATCTCCATTGGCTACAAAGCTCAAAAAGAGGCCGCCCCACGCCGTGGACTTACAGCGTAAATACGCAGATTATTAAACAAGGTCTCTCCACACTTCATTGGTCCAAAAAGATTTGTCTGAGTAACGTGGATTCTTGATCTTGATTTATGAAAGGGAACCTGTGGTTTTGTTCTTTATCTTCGTGATAAAAGTAAAGACGATAACTAATGAGGAAGTTTGGTGGTATCGGCGTTTTGAGCACGTGGGATGGTAGCAGT...

XM_057950777.1
TTATTTAACTAAACGTTACGGGAAAATGGTAGTAATAATTTGATTGATGGTATAAAAAGGCGTGGGAAGGGGAGGAAAAAAGGGTGTTTTGGTGGTGGGGCGGTGGTGCTGATAGGTGAGAAGACTGAAAACATTCTGAGAAGGAGTGGCTTTTTTGTGAATACACGGTGTTGCTGTGGTGGCTGTCAAAGATTTGCGACAACACATCTTTTTTTCCATGGTCTCTCCACACTTCATTGGTCCAAAAAGATTTGTCTGAG...

CDS

3 records

下载 CDS FASTA

LOC131021544
ATGAAGTTTATGAAACTTGGATCAAAACCCGACCAGTTTCAGACTGATGGAGACACTATCAGGTATGTAGCAACAGAATTGGCTACTGACATGGTTGTTAGTGTGGGGGATGTCAAGTTTTATGTTCATAAGTTTCCTCTCCTCTCCAAGAGTTCTCAGCTTCAGAAGCTTGTCACCACTGCAGGCAATGACAACAACGATGAAATTGACATCCATGATATTCCGGGTGGACCTGCAGCATTTGAAGTATGCGCTAAGTT...

Protein

3 records

下载 Protein FASTA

XP_057806760.1
MKFMKLGSKPDQFQTDGDTIRYVATELATDMVVSVGDVKFYVHKFPLLSKSSQLQKLVTTAGNDNNDEIDIHDIPGGPAAFEVCAKFCYGMVVTLNAYNVVAARCAAEYLEMYETVEKGNLIYKIDIFLTSSIFRSWKDSIIVLQTTKSLLPWSEELKIVSHCLDSIATRASTDPSKVDWSYTYNRKKLVSENEHEEKWNGVKKLQTVPNDWWVEDLCDLQIDLYKRVIITIRAKGKMSTDVVGESLKAYALRRLPVFSK...

XP_057806761.1
MKFMKLGSKPDQFQTDGDTIRYVATELATDMVVSVGDVKFYVHKFPLLSKSSQLQKLVTTAGNDNNDEIDIHDIPGGPAAFEVCAKFCYGMVVTLNAYNVVAARCAAEYLEMYETVEKGNLIYKIDIFLTSSIFRSWKDSIIVLQTTKSLLPWSEELKIVSHCLDSIATRASTDPSKVDWSYTYNRKKLVSENEHEEKWNGVKKLQTVPNDWWVEDLCDLQIDLYKRVIITIRAKGKMSTDVVGESLKAYALRRLPVFSK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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