Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002426`

染色体: Chr04 坐标: 38899046-38903502 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002426`
名称	SmilChr04G002426
描述	calcium-transporting ATPase 2, plasma membrane-type-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	38899046 - 38903502 / `-`

ID 对照

NCBI Gene ID	`LOC131021546`
GeneID	`131021546`
locus_tag	`-`
NCBI Name	`LOC131021546`
原始查询	`LOC131021546`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	calcium-transporting ATPase 2, plasma membrane-type-like
产物	calcium-transporting ATPase 2%2C plasma membrane-type-like
Arabidopsis	`AT4G37640` (ACA2) calcium ATPase 2 [Source:NCBI gene (formerly Entrezgene);Acc:829918] identity=79.9; qcov=0.998; evalue=0; confidence=high
Rice	`Os03g0203700` (osACA1) - identity=78.3; qcov=0.999; evalue=0; confidence=high
GO	GO:0005388 (P-type calcium transporter activity); GO:0005516 (calmodulin binding); GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0043231 (intracellular membrane-bounded organelle); GO:0070588 (calcium ion transmembrane transport)
KEGG	-
Pfam	PF00122 (E1-E2_ATPase); PF00689 (Cation_ATPase_C); PF00690 (Cation_ATPase_N); PF00702 (Hydrolase); PF08282 (Hydrolase_3); PF12515 (CaATP_NAI); PF13246 (Cation_ATPase)
InterPro	-
eggNOG	-
NR	GeneID:131021546

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057806763.1`
2	Nucleus	细胞核	0.00000	`XP_057806763.1`
3	Chromosome	染色体	0.00000	`XP_057806763.1`
4	Centromere	着丝粒	0.00000	`XP_057806763.1`
5	Chromatin	染色质	0.00000	`XP_057806763.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:38899781`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B13,C37
`Chr4:38900586`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr4:38900702`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C38
`Chr4:38900736`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B13,C37
`Chr4:38900841`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C10
`Chr4:38900988`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B124,B135,B58,C37
`Chr4:38900997`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C13
`Chr4:38901153`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr4:38901756`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B117
`Chr4:38902128`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B124,B79
`Chr4:38902131`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B105,B22,C48,C6,D10
`Chr4:38902209`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B12,B31,B64,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806763.1

1017 aa

508

1017

CaATP_NAI

Cation_ATPase_N

E1-E2_ATPase

Hydrolase

Cation_ATPase

Hydrolase_3

Cation_ATPase_C

PF12515 CaATP_NAI 7-49 aa PF00690 Cation_ATPase_N 116-182 aa PF00122 E1-E2_ATPase 234-331 aa PF00702 Hydrolase 450-766 aa PF13246 Cation_ATPase 511-659 aa PF08282 Hydrolase_3 736-794 aa PF00689 Cation_ATPase_C 837-1011 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806763.1`	Pfam	`PF12515`	CaATP_NAI	Family	7	49	8.7e-18	64.3	Ca2+-ATPase N terminal autoinhibitory domain
`XP_057806763.1`	Pfam	`PF00690`	Cation_ATPase_N	Domain	116	182	1.4e-16	60.6	Cation transporter/ATPase, N-terminus
`XP_057806763.1`	Pfam	`PF00122`	E1-E2_ATPase	Domain	234	331	2.6e-21	76.0	P-type ATPase actuator domain
`XP_057806763.1`	Pfam	`PF00702`	Hydrolase	Domain	450	766	2e-14	55.2	haloacid dehalogenase-like hydrolase
`XP_057806763.1`	Pfam	`PF13246`	Cation_ATPase	Family	511	659	3.4e-34	118.9	P-type ATPase, cytoplasmic domain N
`XP_057806763.1`	Pfam	`PF08282`	Hydrolase_3	Domain	736	794	9.5e-05	23.0	haloacid dehalogenase-like hydrolase
`XP_057806763.1`	Pfam	`PF00689`	Cation_ATPase_C	Family	837	1011	2.4e-40	138.9	Cation transporting ATPase, C-terminus

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057950780.1
AGCCATTAATTACTACAAATATATTTTTTACACGCCTTTAACCAATTTACTTTCCAATAAATTCGGATCATTGTTTTTCACTCTCTCTCTCTCCTCCGTCTTTCGCTTTTGACGAAGATGCTACGAAACTTCGTTGTGTGTTGCCGGTTGTTTCCCGTCATTTTTATTTTTCTGAAAGTTGATCAGCAAGTTCCGTTGTTTAAAGCGCTTATATATTAAGTTGAAACGCAAAGACTAGTTCCACGGAGAATCGTGAAAAA...

CDS

1 records

下载 CDS FASTA

LOC131021546
ATGGAGAGTTTACTGTGTGAGAAATGGGAGCTGCAGCCGAAGCATTCGTCGACGGAGGTGTTGCAGCGGTGGCGGGATCTGTGTGGGGTCGTCAAGAACCCCAAACGCCGATTCCGCTTCACCGCTAATATCTCCAAACGTCACGAGGCTGCTGAAATGCGCAAAACCAATCAGGAGAAATTGAGGATCGCGGTCCTTGTCTCGAAAGCTGCATTCGAATTCATAAAAGGTGCCAAGACAAGCGAGTACAGTGTCCCCGA...

Protein

1 records

下载 Protein FASTA

XP_057806763.1
MESLLCEKWELQPKHSSTEVLQRWRDLCGVVKNPKRRFRFTANISKRHEAAEMRKTNQEKLRIAVLVSKAAFEFIKGAKTSEYSVPDEVEAAGFKICAEELGSIVEGHDLKKLKLHGGVSGIADKLGTNSANGLSTGDLRRRQEVYGINKFQESEPRSFWVFVWEALHDMTLMILGVCALVSLVVGIATEGWPKGAHDGLGIVASILLVVFVTASSDYRQSLQFRDLDKEKKKISIQVTRNGYRHKMSIYELLPGDVVHL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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