Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002433`

染色体: Chr04 坐标: 38977216-38983315 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002433`
名称	SmilChr04G002433
描述	single myb histone 5-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	38977216 - 38983315 / `-`

ID 对照

NCBI Gene ID	`LOC131021560`
GeneID	`131021560`
locus_tag	`-`
NCBI Name	`LOC131021560`
原始查询	`LOC131021560`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	single myb histone 5-like
产物	single myb histone 5-like
Arabidopsis	`AT1G49950` (TRB1) telomere repeat binding factor 1 [Source:NCBI gene (formerly Entrezgene);Acc:841418] identity=36.9; qcov=0.837; evalue=1.14e-18; confidence=low
Rice	`Os01g0589300` - identity=39.1; qcov=0.801; evalue=3.26e-28; confidence=medium
GO	GO:0000786 (nucleosome); GO:0003691 (double-stranded telomeric DNA binding); GO:0006334 (nucleosome assembly)
KEGG	-
Pfam	PF00249 (Myb_DNA-binding); PF00538 (Linker_histone); PF13921 (Myb_DNA-bind_6)
InterPro	-
eggNOG	-
NR	GeneID:131021560

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057806794.1`
2	Cytoplasm	细胞质	0.40000	`XP_057806795.1`
3	Cytosol	细胞质基质	0.40000	`XP_057806795.1`
4	Chromosome	染色体	0.00000	`XP_057806794.1`
5	Centromere	着丝粒	0.00000	`XP_057806794.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:38977506`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B59,C81
`Chr4:38977670`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B122,B44,B88
`Chr4:38979210`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B122,B44,B88
`Chr4:38980093`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr4:38981882`	`CT`	`C`	1bp_deletion	frameshift_variant	22	A25,A7,B104,B108,B23,B28,B30,B33,B46,B70,C11,C21,C39,C45,C56,C64,C65,C66,C69,C77,C85,C86
`Chr4:38981947`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr4:38982449`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806794.1

301 aa

150

301

Myb_DNA-binding

Myb_DNA-bind_6

Linker_histone

PF00249 Myb_DNA-binding 5-56 aa PF13921 Myb_DNA-bind_6 8-56 aa PF00538 Linker_histone 123-180 aa

XP_057806795.1

246 aa

123

246

Linker_histone

PF00538 Linker_histone 68-125 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806794.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	5	56	1.8e-09	38.2	Myb-like DNA-binding domain
`XP_057806794.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	8	56	4.7e-05	24.2	Myb-like DNA-binding domain
`XP_057806794.1`	Pfam	`PF00538`	Linker_histone	Domain	123	180	3.7e-11	43.8	linker histone H1 and H5 family
`XP_057806795.1`	Pfam	`PF00538`	Linker_histone	Domain	68	125	2.9e-11	44.1	linker histone H1 and H5 family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057950811.1
ATCGTTTTGAAAATATGTTTGGAACTAGTACAAATACGTAGATTTGAATTATACATCTAATAACTTTATTTGGCAGTAATCAATCATTATTTACGAGTTGATATTACTTGAAAACGCACGCATATAGTATACAAATTATAGGAGGAAGAGGGAAAAACTGACAGAAGAGAACAAGACGAAATACGAGGAAAGCAACAGCAGCACCGAACCAAAACGGAAAGAGGGTGCCGCAGCAGCCTCACTGAGGAGCGAAACCACCA...

XM_057950812.1
TCCTAAGCAGAGGTGGACGCCAGAAGAAGAAGCTGCTCTTAAAGCTGGCATTAACAAATATGGAGTTGGAAAATGGAGTACCATCCTTAAAGATCCTGAATTTAAAACGATCTTGCGATCACGTTCTAATGTGGACCTTAAGGACAGGATAAGTGGAGAAATATGAATTGCATGGCTAATGGATTAGGATCTCGGAGAGCTGGTGTTGTACATAAAAACAGTCAGGTGGCCCCAAAGCATGATGAAGGCACTTCGATGGA...

CDS

2 records

下载 CDS FASTA

LOC131021560
ATGGGTGCTCCTAAGCAGAGGTGGACGCCAGAAGAAGAAGCTGCTCTTAAAGCTGGCATTAACAAATATGGAGTTGGAAAATGGAGTACCATCCTTAAAGATCCTGAATTTAAAACGATCTTGCGATCACGTTCTAATGTGGACCTTAAGGATAAGTGGAGAAATATGAATTGCATGGCTAATGGATTAGGATCTCGGAGAGCTGGTGTTGTACATAAAAACAGTCAGGTGGCCCCAAAGCATGATGAAGGCACTTCGAT...

LOC131021560
ATGAATTGCATGGCTAATGGATTAGGATCTCGGAGAGCTGGTGTTGTACATAAAAACAGTCAGGTGGCCCCAAAGCATGATGAAGGCACTTCGATGGATAGCTTGGCTGTTGAGAAGGATCCTGTAGTTCTTGATGCCAAGCCTCTTTCAGAAGTGTACGTGACCACCAGGGATGCTAATTTGGAAAACCAGATTTCAAGGATGGATGATCTAATATTGGATGCTATAACAAAGTTGAAGGAACTTCGAGGATCTAGTCG...

Protein

2 records

下载 Protein FASTA

XP_057806794.1
MGAPKQRWTPEEEAALKAGINKYGVGKWSTILKDPEFKTILRSRSNVDLKDKWRNMNCMANGLGSRRAGVVHKNSQVAPKHDEGTSMDSLAVEKDPVVLDAKPLSEVYVTTRDANLENQISRMDDLILDAITKLKELRGSSRHAIAKYIEDHHSMPPDLERILTANLMALTEKGRLVKVKHQYRIAPRSISLDKGEDPTSSHADGAKDYVEGLRNGIIILTKAQIFAELEKMRSMTAEEAAAVAARAVAEAEAAMAAAEV...

XP_057806795.1
MNCMANGLGSRRAGVVHKNSQVAPKHDEGTSMDSLAVEKDPVVLDAKPLSEVYVTTRDANLENQISRMDDLILDAITKLKELRGSSRHAIAKYIEDHHSMPPDLERILTANLMALTEKGRLVKVKHQYRIAPRSISLDKGEDPTSSHADGAKDYVEGLRNGIIILTKAQIFAELEKMRSMTAEEAAAVAARAVAEAEAAMAAAEVAAVEAEEAEIEAEAAQCFADAAQKALTCVSFRSARLEYMDM

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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