Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002447`

染色体: Chr04 坐标: 39180055-39187389 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002447`
名称	SmilChr04G002447
描述	uncharacterized SmilChr04G002447
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	39180055 - 39187389 / `-`

ID 对照

NCBI Gene ID	`LOC131021574`
GeneID	`131021574`
locus_tag	`-`
NCBI Name	`LOC131021574`
原始查询	`LOC131021574`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os08g0208400; species=rice; confidence=medium
产物	hit=Os08g0208400; species=rice; confidence=medium
Arabidopsis	`AT1G40087` (AT1G40087) Plant transposase (Ptta/En/Spm family) [Source:NCBI gene (formerly Entrezgene);Acc:840721] identity=22; qcov=0.248; evalue=6.74e-12; confidence=weak
Rice	`Os08g0208400` - identity=40.6; qcov=0.597; evalue=0; confidence=medium
GO	GO:0006508 (proteolysis); GO:0008234 (cysteine-type peptidase activity)
KEGG	-
Pfam	PF02902 (Peptidase_C48); PF02992 (Transposase_21); PF03004 (Transposase_24); PF13960 (DUF4218); PF13963 (Transpos_assoc)
InterPro	-
eggNOG	-
NR	GeneID:131021574

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057806810.1`
2	Chromosome	染色体	0.00000	`XP_057806810.1`
3	Centromere	着丝粒	0.00000	`XP_057806810.1`
4	Chromatin	染色质	0.00000	`XP_057806810.1`
5	Telomere	端粒	0.00000	`XP_057806810.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:39180325`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B25,C16
`Chr4:39180327`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B25,C16
`Chr4:39180329`	`GC`	`G`	1bp_deletion	frameshift_variant	2	C27,C48
`Chr4:39180329`	`GC`	`G`	1bp_deletion	CDS_variant	2	C27,C48
`Chr4:39180377`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A3
`Chr4:39180476`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B18,B85,C19,C27,C8
`Chr4:39180480`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr4:39180486`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B126
`Chr4:39180535`	`G`	`A`	EMS_canonical_SNV	stop_gained	4	A11,B140,B38,C69
`Chr4:39180535`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A11,B140,B38,C69
`Chr4:39180666`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B7,C42,C80
`Chr4:39180699`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806810.1

1292 aa

646

1292

Transpos_assoc

Transposase_21

DUF4218

Transposase_24

Peptidase_C48

PF13963 Transpos_assoc 11-83 aa PF02992 Transposase_21 279-490 aa PF13960 DUF4218 673-742 aa PF03004 Transposase_24 823-953 aa PF02902 Peptidase_C48 1160-1285 aa

XP_057806811.1

1292 aa

646

1292

Transpos_assoc

Transposase_21

DUF4218

Transposase_24

Peptidase_C48

PF13963 Transpos_assoc 11-83 aa PF02992 Transposase_21 279-490 aa PF13960 DUF4218 673-742 aa PF03004 Transposase_24 823-953 aa PF02902 Peptidase_C48 1160-1285 aa

XP_057806812.1

1289 aa

644

1289

Transpos_assoc

Transposase_21

DUF4218

Transposase_24

Peptidase_C48

PF13963 Transpos_assoc 11-83 aa PF02992 Transposase_21 279-490 aa PF13960 DUF4218 673-742 aa PF03004 Transposase_24 823-953 aa PF02902 Peptidase_C48 1157-1282 aa

XP_057806813.1

1284 aa

642

1284

Transpos_assoc

Transposase_21

DUF4218

Transposase_24

Peptidase_C48

PF13963 Transpos_assoc 3-75 aa PF02992 Transposase_21 271-482 aa PF13960 DUF4218 665-734 aa PF03004 Transposase_24 815-945 aa PF02902 Peptidase_C48 1152-1277 aa

XP_057806814.1

1284 aa

642

1284

Transpos_assoc

Transposase_21

DUF4218

Transposase_24

Peptidase_C48

PF13963 Transpos_assoc 3-75 aa PF02992 Transposase_21 271-482 aa PF13960 DUF4218 665-734 aa PF03004 Transposase_24 815-945 aa PF02902 Peptidase_C48 1152-1277 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806810.1`	Pfam	`PF13963`	Transpos_assoc	Domain	11	83	3e-20	72.9	Transposase-associated domain
`XP_057806810.1`	Pfam	`PF02992`	Transposase_21	Family	279	490	5.2e-95	317.4	Transposase family tnp2
`XP_057806810.1`	Pfam	`PF13960`	DUF4218	Domain	673	742	3.3e-23	82.4	Domain of unknown function (DUF4218)
`XP_057806810.1`	Pfam	`PF03004`	Transposase_24	Family	823	953	1.7e-12	48.3	Plant transposase (Ptta/En/Spm family)
`XP_057806810.1`	Pfam	`PF02902`	Peptidase_C48	Domain	1160	1285	8e-12	46.2	Ulp1 protease family, C-terminal catalytic domain
`XP_057806811.1`	Pfam	`PF13963`	Transpos_assoc	Domain	11	83	3e-20	72.9	Transposase-associated domain
`XP_057806811.1`	Pfam	`PF02992`	Transposase_21	Family	279	490	5.2e-95	317.4	Transposase family tnp2
`XP_057806811.1`	Pfam	`PF13960`	DUF4218	Domain	673	742	3.3e-23	82.4	Domain of unknown function (DUF4218)
`XP_057806811.1`	Pfam	`PF03004`	Transposase_24	Family	823	953	1.7e-12	48.3	Plant transposase (Ptta/En/Spm family)
`XP_057806811.1`	Pfam	`PF02902`	Peptidase_C48	Domain	1160	1285	8e-12	46.2	Ulp1 protease family, C-terminal catalytic domain
`XP_057806812.1`	Pfam	`PF13963`	Transpos_assoc	Domain	11	83	3e-20	72.9	Transposase-associated domain
`XP_057806812.1`	Pfam	`PF02992`	Transposase_21	Family	279	490	5.1e-95	317.4	Transposase family tnp2
`XP_057806812.1`	Pfam	`PF13960`	DUF4218	Domain	673	742	3.3e-23	82.4	Domain of unknown function (DUF4218)
`XP_057806812.1`	Pfam	`PF03004`	Transposase_24	Family	823	953	1.7e-12	48.4	Plant transposase (Ptta/En/Spm family)
`XP_057806812.1`	Pfam	`PF02902`	Peptidase_C48	Domain	1157	1282	8.4e-12	46.1	Ulp1 protease family, C-terminal catalytic domain
`XP_057806813.1`	Pfam	`PF13963`	Transpos_assoc	Domain	3	75	3e-20	72.9	Transposase-associated domain
`XP_057806813.1`	Pfam	`PF02992`	Transposase_21	Family	271	482	5.1e-95	317.4	Transposase family tnp2
`XP_057806813.1`	Pfam	`PF13960`	DUF4218	Domain	665	734	3.3e-23	82.4	Domain of unknown function (DUF4218)
`XP_057806813.1`	Pfam	`PF03004`	Transposase_24	Family	815	945	1.7e-12	48.4	Plant transposase (Ptta/En/Spm family)
`XP_057806813.1`	Pfam	`PF02902`	Peptidase_C48	Domain	1152	1277	7.9e-12	46.2	Ulp1 protease family, C-terminal catalytic domain
`XP_057806814.1`	Pfam	`PF13963`	Transpos_assoc	Domain	3	75	3e-20	72.9	Transposase-associated domain
`XP_057806814.1`	Pfam	`PF02992`	Transposase_21	Family	271	482	5.1e-95	317.4	Transposase family tnp2
`XP_057806814.1`	Pfam	`PF13960`	DUF4218	Domain	665	734	3.3e-23	82.4	Domain of unknown function (DUF4218)
`XP_057806814.1`	Pfam	`PF03004`	Transposase_24	Family	815	945	1.7e-12	48.4	Plant transposase (Ptta/En/Spm family)
`XP_057806814.1`	Pfam	`PF02902`	Peptidase_C48	Domain	1152	1277	7.9e-12	46.2	Ulp1 protease family, C-terminal catalytic domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057950829.1
CAGCATGTCGTCTATGTTCATGGTGAGGTGCTAATACACGACGTGGGAAGGCGCGCGTCGTCTTTAATACAATAGACGACGTGCAATGGGCTTGTCGTGAGTCTTAAATTTCAAATTAGGTTTAGGCGTTTCCCTGCACTCTCTCGCGCCGCCGCTCTCCCAAATTTCGTGAGTTTGAAATTTCAAGCAAAGTCTCCGCCGTCCGTCACTATTCCAGCCACCGTCCGTCGCACCAGCCACTGTCGCACCCACCGGCGCTT...

XM_057950827.1
CAGCATGTCGTCTATGTTCATGGTGAGGTGCTAATACACGACGTGGGAAGGCGCGCGTCGTCTTTAATACAATAGACGACGTGCAATGGGCTTGTCGTGAGTCTTAAATTTCAAATTAGGTTTAGGCGTTTCCCTGCACTCTCTCGCGCCGCCGCTCTCCCAAATTTCGTGAGTTTGAAATTTCAAGCAAAGTCTCCGCCGTCCGTCACTATTCCAGCCACCGTCCGTCGCACCAGCCACTGTCGCACCCACCGGCGCTT...

CDS

5 records

下载 CDS FASTA

LOC131021574
ATGCCCACTCTTAAGGTAATCAAAATGGATAAAGGTTGGATGTCCAAAAATAGATTATCAAACGAGTACGAAGTAGGAGTGGAGTCTTTCTTGCAGTTTGCCGTTAAAAATGGGAAAAATCCCAATGTTATGCCTTGTCCTTGTGTCAAGTGTGGCAATCTACGCGAGAAGGATGTCAAAACCATAAGAGCACATCTCACATATAATGGCATGGATTTAACATACGTTAGTTGGATTTATCATGGGGAGAGAAGTAGACC...

Protein

5 records

下载 Protein FASTA

XP_057806810.1
MPTLKVIKMDKGWMSKNRLSNEYEVGVESFLQFAVKNGKNPNVMPCPCVKCGNLREKDVKTIRAHLTYNGMDLTYVSWIYHGERSRPNTSNKEEEESSVGHDFYSDEPVDMVHDAYVDNPTHFHRLLEEAEMPLYFGCDGFTKLSATVKLYNLKAKYGWSDTSFTDLLMLIGEMLPKDNVLPSSLYEAKKSLSTLGMKYEKIHACPEDCILYRNEYANLVNCPTCGKSRWKVLKNDKINEGVPAKVLWYFPPIPRFQRMF...

XP_057806811.1
MPTLKVIKMDKGWMSKNRLSNEYEVGVESFLQFAVKNGKNPNVMPCPCVKCGNLREKDVKTIRAHLTYNGMDLTYVSWIYHGERSRPNTSNKEEEESSVGHDFYSDEPVDMVHDAYVDNPTHFHRLLEEAEMPLYFGCDGFTKLSATVKLYNLKAKYGWSDTSFTDLLMLIGEMLPKDNVLPSSLYEAKKSLSTLGMKYEKIHACPEDCILYRNEYANLVNCPTCGKSRWKVLKNDKINEGVPAKVLWYFPPIPRFQRMF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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