Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002463`

染色体: Chr04 坐标: 39447909-39455521 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002463`
名称	SmilChr04G002463
描述	elongator complex protein 3
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	39447909 - 39455521 / `-`

ID 对照

NCBI Gene ID	`LOC131021592`
GeneID	`131021592`
locus_tag	`-`
NCBI Name	`LOC131021592`
原始查询	`LOC131021592`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	elongator complex protein 3
产物	elongator complex protein 3
Arabidopsis	`AT5G50320` (ELO3) radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein [Source:NCBI gene (formerly Entrezgene);Acc:835098] identity=91.3; qcov=0.996; evalue=0; confidence=high
Rice	`Os04g0484900` (OsHAG703) - identity=90.6; qcov=0.982; evalue=0; confidence=high
GO	GO:0002926 (tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0016747 (acyltransferase activity, transferring groups other than amino-acyl groups); GO:0033588 (elongator holoenzyme complex); GO:0051536 (iron-sulfur cluster binding)
KEGG	-
Pfam	PF00583 (Acetyltransf_1); PF04055 (Radical_SAM); PF16199 (Radical_SAM_C); PF23613 (ELP3_N)
InterPro	-
eggNOG	-
NR	GeneID:131021592

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057806838.1`
2	Cytosol	细胞质基质	1.00000	`XP_057806838.1`
3	Nucleus	细胞核	0.40000	`XP_057806838.1`
4	Chromosome	染色体	0.00000	`XP_057806838.1`
5	Centromere	着丝粒	0.00000	`XP_057806838.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:39448426`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C2
`Chr4:39451525`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B111
`Chr4:39451594`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:39452162`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B59,C81
`Chr4:39452301`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C64
`Chr4:39455351`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B68
`Chr4:39455351`	`TC`	`T`	1bp_deletion	CDS_variant	1	B68
`Chr4:39455354`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B68
`Chr4:39455363`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr4:39455380`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C1,C3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806838.1

564 aa

282

564

ELP3_N

Radical_SAM

Radical_SAM_C

Acetyltransf_1

PF23613 ELP3_N 33-101 aa PF04055 Radical_SAM 125-311 aa PF16199 Radical_SAM_C 330-408 aa PF00583 Acetyltransf_1 451-552 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806838.1`	Pfam	`PF23613`	ELP3_N	Domain	33	101	1.1e-26	93.2	ELP3 N-terminal domain
`XP_057806838.1`	Pfam	`PF04055`	Radical_SAM	Domain	125	311	3.1e-15	57.4	Radical SAM superfamily
`XP_057806838.1`	Pfam	`PF16199`	Radical_SAM_C	Family	330	408	1.6e-22	80.1	Radical_SAM C-terminal domain
`XP_057806838.1`	Pfam	`PF00583`	Acetyltransf_1	Family	451	552	0.0002	22.3	Acetyltransferase (GNAT) family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057950855.1
AACAAATATCGATTTCCATGATTTTAGATAGAAACCGTACCAAATAGAGTAAAAGGTTTACCATTAAACCCTCGCTGTATCAGCATCTTCACCGCTTTGACGCAGAAAACAGTTTGCCAAACGGCAGAACGTAAAAAATGACGGCGGTAGAAGCCATACCTGAAGCCCGGAAGCTCCCACGGCCGGGCCGCGGGGGAGTCATCGCCCACGAACTCTCCGAAGAAGAAGCCCGCGTCAAAGCAATCGCTGAAATAGTATCC...

CDS

1 records

下载 CDS FASTA

LOC131021592
ATGACGGCGGTAGAAGCCATACCTGAAGCCCGGAAGCTCCCACGGCCGGGCCGCGGGGGAGTCATCGCCCACGAACTCTCCGAAGAAGAAGCCCGCGTCAAAGCAATCGCTGAAATAGTATCCACAATGGTTGATCTCTCGCGCAAGGGCCAAGACGTCGACCTAAACGCCGTCAAATCGGCGGCGTGCCGGAAATACGGGCTCTCCAAGGCGCCGAAGCTCGTCGAGATGATAGCAGCGCTGCCTGAATCCGAGAAGGA...

Protein

1 records

下载 Protein FASTA

XP_057806838.1
MTAVEAIPEARKLPRPGRGGVIAHELSEEEARVKAIAEIVSTMVDLSRKGQDVDLNAVKSAACRKYGLSKAPKLVEMIAALPESEKEALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPAEYRDYFTRNLHDALSGHTSANVEEAVSYSEHSAIKCIGMTIETRPDYCLGPHLRQMLSYGCTRL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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