当前解析结果
SmilChr04G002499| 统一新 Gene ID | SmilChr04G002499 |
|---|---|
| 名称 | SmilChr04G002499 |
| 描述 | beta-galactosidase 3-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 39923814 - 39929691 / + |
| NCBI Gene ID | LOC131021629 |
|---|---|
| GeneID | 131021629 |
| locus_tag | - |
| NCBI Name | LOC131021629 |
| 原始查询 | LOC131021629 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | beta-galactosidase 3-like |
| 产物 | beta-galactosidase 3-like |
| Arabidopsis | AT4G36360 (BGAL3)beta-galactosidase 3 [Source:NCBI gene (formerly Entrezgene);Acc:829788] identity=78.4; qcov=0.999; evalue=0; confidence=high |
| Rice | Os03g0165400 (OsBgal1)- identity=73.3; qcov=0.967; evalue=0; confidence=high |
| GO | GO:0004565 (beta-galactosidase activity); GO:0005618 (cell wall); GO:0005773 (vacuole); GO:0005975 (carbohydrate metabolic process); GO:0030246 (carbohydrate binding) |
| KEGG | - |
| Pfam | PF01301 (Glyco_hydro_35); PF02140 (SUEL_Lectin); PF02449 (Glyco_hydro_42); PF17834 (GHD); PF21467 (BetaGal_gal-bd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021629 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 0.60000 | XP_057806866.1 |
| 2 | Vacuole | 液泡 | 0.60000 | XP_057806866.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057806866.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057806866.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057806866.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:39924458 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B123 |
Chr4:39924611 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A23,B69 |
Chr4:39925430 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B78,C44 |
Chr4:39925850 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C4,C49 |
Chr4:39926107 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A14,C63,C84 |
Chr4:39927471 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B32,B51 |
Chr4:39927943 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B18 |
Chr4:39927943 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B18 |
Chr4:39928757 |
TA |
T |
1bp_deletion | frameshift_variant | 1 | C37 |
Chr4:39928757 |
TA |
T |
1bp_deletion | CDS_variant | 1 | C37 |
Chr4:39928776 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A8,B129,C29,C70,C75 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057806866.1PF01301
Glyco_hydro_35 36-340 aa
PF02449
Glyco_hydro_42 57-189 aa
PF17834
GHD 363-419 aa
PF21467
BetaGal_gal-bd 472-539 aa
PF21467
BetaGal_gal-bd 622-707 aa
PF02140
SUEL_Lectin 764-841 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806866.1 |
Pfam | PF01301 |
Glyco_hydro_35 | Domain | 36 | 340 | 3e-123 | 412.2 | Glycosyl hydrolases family 35 |
XP_057806866.1 |
Pfam | PF02449 |
Glyco_hydro_42 | Domain | 57 | 189 | 1.8e-06 | 28.3 | Beta-galactosidase |
XP_057806866.1 |
Pfam | PF17834 |
GHD | Domain | 363 | 419 | 4.4e-25 | 87.9 | Beta-sandwich domain in beta galactosidase |
XP_057806866.1 |
Pfam | PF21467 |
BetaGal_gal-bd | Domain | 472 | 539 | 3.9e-35 | 120.5 | Beta-galactosidase, galactose-binding domain |
XP_057806866.1 |
Pfam | PF21467 |
BetaGal_gal-bd | Domain | 622 | 707 | 3.9e-35 | 120.5 | Beta-galactosidase, galactose-binding domain |
XP_057806866.1 |
Pfam | PF02140 |
SUEL_Lectin | Domain | 764 | 841 | 1.4e-22 | 80.5 | D-galactoside/L-rhamnose binding SUEL lectin domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。