Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002506`

染色体: Chr04 坐标: 40037695-40044538 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002506`
名称	SmilChr04G002506
描述	uncharacterized SmilChr04G002506
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	40037695 - 40044538 / `+`

ID 对照

NCBI Gene ID	`LOC131021636`
GeneID	`131021636`
locus_tag	`-`
NCBI Name	`LOC131021636`
原始查询	`LOC131021636`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Transcription factor IIIC, subunit 5 [Source:NCBI gene (formerly Entrezgene);Acc:824103]; symbol=AT3G49410; hit=AT3G49410; species=arabidopsis; confidence=medium
产物	Transcription factor IIIC, subunit 5 [Source:NCBI gene (formerly Entrezgene);Acc:824103]; symbol=AT3G49410; hit=AT3G49410; species=arabidopsis; confidence=medium
Arabidopsis	`AT3G49410` (AT3G49410) Transcription factor IIIC, subunit 5 [Source:NCBI gene (formerly Entrezgene);Acc:824103] identity=43.2; qcov=0.963; evalue=2.83e-128; confidence=medium
Rice	`-` -
GO	GO:0000127 (transcription factor TFIIIC complex); GO:0006384 (transcription initiation at RNA polymerase III promoter)
KEGG	-
Pfam	PF09734 (Tau95); PF17682 (Tau95_N)
InterPro	-
eggNOG	-
NR	GeneID:131021636

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057806872.1`
2	Nucleoplasm	核质	0.60000	`XP_057806872.1`
3	Chromosome	染色体	0.60000	`XP_057806873.1`
4	Centromere	着丝粒	0.00000	`XP_057806872.1`
5	Chromatin	染色质	0.00000	`XP_057806872.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:40037972`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B39
`Chr4:40039143`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C3
`Chr4:40039184`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C32
`Chr4:40039204`	`TG`	`T`	1bp_deletion	frameshift_variant	1	C18
`Chr4:40039204`	`TG`	`T`	1bp_deletion	CDS_variant	1	C18
`Chr4:40039304`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C32
`Chr4:40039602`	`GC`	`G`	1bp_deletion	frameshift_variant	36	A3,A9,B108,B110,B111,B118,B119,B12,B121,B128,B134,B137,B25,B29,B4,B40,B45,B55,B56,B6,B77,B80,B96,B98,C1,C26,C3,C34,C38,C47,C58,C67,C72,C78,D2,D8
`Chr4:40040767`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A7,B111,B19,B61,B7
`Chr4:40040968`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B126
`Chr4:40041007`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A7,B111,B19,B7,C8
`Chr4:40042029`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B24
`Chr4:40042734`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B92,C87

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806872.1

597 aa

298

597

Tau95_N

Tau95

PF17682 Tau95_N 21-172 aa PF09734 Tau95 210-360 aa

XP_057806873.1

557 aa

278

557

Tau95_N

Tau95

PF17682 Tau95_N 3-132 aa PF09734 Tau95 170-320 aa

XP_057806874.1

557 aa

278

557

Tau95_N

Tau95

PF17682 Tau95_N 3-132 aa PF09734 Tau95 170-320 aa

XP_057806875.1

507 aa

254

507

Tau95

PF09734 Tau95 120-270 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806872.1`	Pfam	`PF17682`	Tau95_N	Domain	21	172	5.7e-25	88.7	Tau95 Triple barrel domain
`XP_057806872.1`	Pfam	`PF09734`	Tau95	Family	210	360	2.6e-28	100.2	RNA polymerase III transcription factor (TF)IIIC subunit HTH domain
`XP_057806873.1`	Pfam	`PF17682`	Tau95_N	Domain	3	132	2.2e-15	57.8	Tau95 Triple barrel domain
`XP_057806873.1`	Pfam	`PF09734`	Tau95	Family	170	320	2.3e-28	100.4	RNA polymerase III transcription factor (TF)IIIC subunit HTH domain
`XP_057806874.1`	Pfam	`PF17682`	Tau95_N	Domain	3	132	2.2e-15	57.8	Tau95 Triple barrel domain
`XP_057806874.1`	Pfam	`PF09734`	Tau95	Family	170	320	2.3e-28	100.4	RNA polymerase III transcription factor (TF)IIIC subunit HTH domain
`XP_057806875.1`	Pfam	`PF09734`	Tau95	Family	120	270	1.7e-28	100.8	RNA polymerase III transcription factor (TF)IIIC subunit HTH domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057950889.1
TTCATCGAAGACCTGAACAACCCGATTCGCTCGACAAACAACCGACGGCGGCCTTACAATTGAATTCGTCGCCGGTGCTTCGTTTCCTGCTATGGAGTAATATAACCCTCCGGGAGAAAATAATACTTCGACTCATTGAATCAAGGAACTTTTTCGTTTTTCTTCATTTTTTAGATCCAATGAAGTAACGTTGTTAACATACACCTAGTTACTTTAGTTTATTGGTTTTGATTTGTTAGAAATGGGGGTTATCGAAGATG...

XM_057950890.1
TCATCGAAGACCTGAACAACCCGATTCGCTCGACAAACAACCGACGGCGGCCTTACAATTGAATTCGTCGCCGGTGCTTCGTTTCCTGCTATGGAGTAATATAACCCTCCGGGAGAAAATAATACTTCGACTCATTGAATCAAGGAACTTTTTCGTTTTTCTTCATTTTTTAGATCCAATGAAGTGTCCTACCCAGTGGCGGAGAGGCATTTGTAGTTCATTACCCTGGTTATCCTTCTTCTACTGAACGTGCAATCGAG...

CDS

4 records

下载 CDS FASTA

LOC131021636
ATGGGGGTTATCGAAGATGGTTCGATTTCAGGTGTCCTACCCAGTGGCGGAGAGGCATTTGTAGTTCATTACCCTGGTTATCCTTCTTCTACTGAACGTGCAATCGAGACTCTGGGAGGAATGCAACAGATTCTTAAGGTTCGTGCTGAGAAGTCGAACAAGTTAGAGCTGTATTTTCGTCCTGAAGATCCATATTCACATCCAGCTTCTGGGGAACTTCAGACATGCACCAAATTCCTGTTGAAAATTTCCAAAAAGAA...

LOC131021636
ATGCAACAGATTCTTAAGGTTCGTGCTGAGAAGTCGAACAAGTTAGAGCTGTATTTTCGTCCTGAAGATCCATATTCACATCCAGCTTCTGGGGAACTTCAGACATGCACCAAATTCCTGTTGAAAATTTCCAAAAAGAAAGTTAATGATATGAAAAATGTGATTGACCGTTCTGGACATGCATCAGCAAATCCGCTTCATCTTAATGAGGATATTTTAATTTCTCAATCGACTGAAACTACAGAAAATATCGTCAAGCC...

Protein

4 records

下载 Protein FASTA

XP_057806872.1
MGVIEDGSISGVLPSGGEAFVVHYPGYPSSTERAIETLGGMQQILKVRAEKSNKLELYFRPEDPYSHPASGELQTCTKFLLKISKKKVNDMKNVIDRSGHASANPLHLNEDILISQSTETTENIVKPNCEYVLPSSEAKPQINNGPQEQLSADIVARVSEEYHFNGMVDYQHVLAVHADATRRKKRNLAAIEPESENADPVNVDQDDLMILVPPLFSLKVRPQKIILKPSGDLSLKKKQDTVVQKRSELEIDQCLAIDFN...

XP_057806873.1
MQQILKVRAEKSNKLELYFRPEDPYSHPASGELQTCTKFLLKISKKKVNDMKNVIDRSGHASANPLHLNEDILISQSTETTENIVKPNCEYVLPSSEAKPQINNGPQEQLSADIVARVSEEYHFNGMVDYQHVLAVHADATRRKKRNLAAIEPESENADPVNVDQDDLMILVPPLFSLKVRPQKIILKPSGDLSLKKKQDTVVQKRSELEIDQCLAIDFNIKEIPKKVDWEKSIARESDLWQWQTIVCELFEERPVWVKY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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