Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G002580

染色体: Chr04 坐标: 41167175-41171422 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G002580
名称SmilChr04G002580
描述TSL-kinase interacting protein 1
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向41167175 - 41171422 / -

ID 对照

NCBI Gene IDLOC131021694
GeneID131021694
locus_tag-
NCBI NameLOC131021694
原始查询LOC131021694

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述TSL-kinase interacting protein 1
产物TSL-kinase interacting protein 1
ArabidopsisAT4G39380 (AT4G39380)
TSL-kinase interacting-like protein [Source:NCBI gene (formerly Entrezgene);Acc:830093]
identity=31.3; qcov=0.968; evalue=2.75e-43; confidence=low
RiceOs03g0241100
-
identity=59.6; qcov=0.205; evalue=7.61e-34; confidence=weak
GOGO:0003682 (chromatin binding); GO:0005634 (nucleus); GO:0007389 (pattern specification process)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131021694

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057806948.1
2 Chromosome 染色体 0.00000 XP_057806948.1
3 Centromere 着丝粒 0.00000 XP_057806948.1
4 Chromatin 染色质 0.00000 XP_057806948.1
5 Telomere 端粒 0.00000 XP_057806948.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:41167797 C T EMS_canonical_SNV CDS_variant 4 A21,B56,B96,C35
Chr4:41168235 G A EMS_canonical_SNV CDS_variant 1 B54
Chr4:41168249 G A EMS_canonical_SNV CDS_variant 1 B54
Chr4:41168464 C T EMS_canonical_SNV CDS_variant 2 B102,B76
Chr4:41168894 G A EMS_canonical_SNV CDS_variant 3 B1,B88,C85
Chr4:41169613 G A EMS_canonical_SNV CDS_variant 3 B124,B135,C37
Chr4:41169711 C T EMS_canonical_SNV CDS_variant 3 B40,B98,C80
Chr4:41169723 C T EMS_canonical_SNV CDS_variant 5 B1,B46,B79,B88,C85
Chr4:41170128 C T EMS_canonical_SNV CDS_variant 5 A18,B1,B46,B88,C85
Chr4:41170580 C T EMS_canonical_SNV CDS_variant 1 A18
Chr4:41170677 G A EMS_canonical_SNV CDS_variant 2 B104,C20

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

9 records

下载 cDNA FASTA
XM_057950973.1
ACATGGCACGAGATGGCATTTGGTTTTCATGTCCAAGGAATCGTATAAAATACTAAATAAAACTCTCGGCTCCTTCCATTAAAATTCAAATTGGGGCACCAAAAATTAACGCAATTATTCCCGCCACCGCCGATTTTCACACAATCCCAGCCAGATCTGCGCCTGCTATTAGCGATCTACATGCCGCGTCAAGATACTCTTCCATGAAGTCATATAGACAACAAAAGAGAAAGAGAGGTGATATCAATAGAAACCAGGAT...
XM_057950969.1
GGAATCGTATAAAATACTAAATAAAACTCTCGGCTCCTTCCATTAAAATTCAAATTGGGGCACCAAAAATTAACGCAATTATTCCCGCCACCGCCGATTTTCACACAATCCCAGCCAGATCTGCGCCTGCTATTAGCGATCTACATGCCGCGTCAAGATACTCTTCCATGAAGTCATATAGACAACAAAAGAGAAAGAGAGGTGATATCAATAGAAACCAGGATGAATGCATGGGTATTAATCTAAAGAAACCTGCAAAT...

CDS

9 records

下载 CDS FASTA
LOC131021694
ATGAAGTCATATAGACAACAAAAGAGAAAGAGAGGTGATATCAATAGAAACCAGGATGAATGCATGGGTATTAATCTAAAGAAACCTGCAAATGAGACTGGTCGGGGGCCTCTGAGCTCTCTAGAAAATATAATGATGCCACATTTGGATCCTCCAATTCAACTGCAGATTCCATCTAGAAAAATTAAGCTGCAGCTTTTCCCAATAAATGGACAAACTCGCCTAGGATTAGAGAAGGATGGTCACAATCCATTTTTAGA...
LOC131021694
ATGAAGTCATATAGACAACAAAAGAGAAAGAGAGGTGATATCAATAGAAACCAGGATGAATGCATGGGTATTAATCTAAAGAAACCTGCAAATGAGACTGGTCGGGGGCCTCTGAGCTCTCTAGAAAATATAATGATGCCACATTTGGATCCTCCAATTCAACTGCAGATTCCATCTAGAAAAATTAAGCTGCAGCTTTTCCCAATAAATGGACAAACTCGCCTAGGATTAGAGAAGGATGGTCACAATCCATTTTTAGA...

Protein

9 records

下载 Protein FASTA
XP_057806948.1
MKSYRQQKRKRGDINRNQDECMGINLKKPANETGRGPLSSLENIMMPHLDPPIQLQIPSRKIKLQLFPINGQTRLGLEKDGHNPFLELTLSARKRISSVVRHLDAKWSSSTAVTGQLMLFPYNTKLEQLASCRRWTLNDSAFTVWDVYVDVGSPSIFRLRYGWLCNHQPEIFGGLCNSSLLEAHTGFEDKGSPRNLVIPNHQEEQTNESCEVIKIQGNADETLRSDVNQLKASDAPTGLVDDKVTIEADLVHPGVPWDDN...
XP_057806949.1
MKSYRQQKRKRGDINRNQDECMGINLKKPANETGRGPLSSLENIMMPHLDPPIQLQIPSRKIKLQLFPINGQTRLGLEKDGHNPFLELTLSARKRISSVVRHLDAKWSSSTAVTGQLMLFPYNTKLEQLASCRRWTLNDSAFTVWDVYVDVGSPSIFRLRYGWLCNHQPEIFGGLCNSSLLEAHTGFEDKGSPRNLVIPNHQEEQTNESCEVIKIQGNADETLRSDVNQLKASDAPTGLVDDKVTIEADLVHPGVPWDDN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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