Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001912`

染色体: Chr01 坐标: 34266914-34268749 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001912`
名称	SmilChr01G001912
描述	capsanthin/capsorubin synthase, chromoplastic-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	34266914 - 34268749 / `+`

ID 对照

NCBI Gene ID	`LOC131021739`
GeneID	`131021739`
locus_tag	`-`
NCBI Name	`LOC131021739`
原始查询	`LOC131021739`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	capsanthin/capsorubin synthase, chromoplastic-like
产物	capsanthin/capsorubin synthase%2C chromoplastic-like
Arabidopsis	`AT3G10230` (LYC) lycopene cyclase [Source:NCBI gene (formerly Entrezgene);Acc:820185] identity=56; qcov=0.897; evalue=0; confidence=high
Rice	`Os02g0190600` (OsLCYb) - identity=54.2; qcov=0.901; evalue=1.01e-178; confidence=high
GO	GO:0016117 (carotenoid biosynthetic process); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen)
KEGG	smil00906 (Carotenoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00890 (FAD_binding_2); PF01494 (FAD_binding_3); PF05834 (Lycopene_cycl)
InterPro	-
eggNOG	-
NR	GeneID:131021739

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057807004.1`
2	Chloroplast membrane	叶绿体膜	0.60000	`XP_057807004.1`
3	Chloroplast stroma	叶绿体基质	0.20000	`XP_057807004.1`
4	Nucleus	细胞核	0.00000	`XP_057807004.1`
5	Chromosome	染色体	0.00000	`XP_057807004.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:34267240`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:34267292`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A2,C39
`Chr1:34267320`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B99
`Chr1:34267390`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B128
`Chr1:34267390`	`GC`	`G`	1bp_deletion	CDS_variant	1	B128
`Chr1:34267393`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B128
`Chr1:34267744`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D9
`Chr1:34267976`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:34268019`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:34268109`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A2,B104,D10,D11
`Chr1:34268174`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B27
`Chr1:34268174`	`TG`	`T`	1bp_deletion	CDS_variant	1	B27

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807004.1

494 aa

247

494

FAD_binding_3

FAD_binding_2

Lycopene_cycl

PF01494 FAD_binding_3 78-107 aa PF00890 FAD_binding_2 79-108 aa PF05834 Lycopene_cycl 79-470 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807004.1`	Pfam	`PF01494`	FAD_binding_3	Domain	78	107	4.1e-05	23.7	FAD binding domain
`XP_057807004.1`	Pfam	`PF00890`	FAD_binding_2	Domain	79	108	8.1e-05	22.7	FAD binding domain
`XP_057807004.1`	Pfam	`PF05834`	Lycopene_cycl	Family	79	470	3.6e-144	481.3	Lycopene cyclase protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057951021.1
ATTAAGATAATTAGGGGTATTTTCTCAAAAAAAAAAGTTAATTAGGAGTAGGTTTGCCGATGATGGCCCACCAATTGGTAGAAATGCCAAATTTTGTTTTCAAGAGCATCAATTTTCATCAAATTTCGGGTCATTTTCTGGGATCCTCTCTGTTCAGTTAGTTAAAGATTCAATTTTGGCAGCATTGAATTCTTGTGATTCTTTTTCTGCATATTTAGTTCAAGAACCTGTTTTATTTGCATTCTCTCTCTGTCTCTCTC...

CDS

1 records

下载 CDS FASTA

LOC131021739
ATGGCGTCTCTGCTCAATCTCACCCCATCACCCCTGCTCTCCACTTCAAACCCATGTTCATTCCCAGCCAAGACTCCAACTTTGCATCCAATCCCTTACACCCATCTCAGAAAAAATCCCCAAACAGCTCAAAGCAGCAAGTTCGACAGCTTTCTTGATTTGGAACCCAAATCAAAACCGGAGTCTTTGAATTTCGACATCCCCTGGTTCAACCAGGCCGACCGCTCCCGGTTCGACGTCATCGTCATCGGCGCCGGCCC...

Protein

1 records

下载 Protein FASTA

XP_057807004.1
MASLLNLTPSPLLSTSNPCSFPAKTPTLHPIPYTHLRKNPQTAQSSKFDSFLDLEPKSKPESLNFDIPWFNQADRSRFDVIVIGAGPAGLRLAEQVARRGIKVCCLDPSPLTMWPNNYGVWVDEFESLGLEDCLDAKWPMTCVHIDDRKTKYLDRAYGRVNRKDLKLKLLSDCATHGVKFYKAKVWKVNHEEFESSISCDDGIELRASLIVDASGFASAFTEYDKPRNPGFQIAHGILAEVDEHPFDLDKMVLMDWRDSH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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