Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002686`

染色体: Chr04 坐标: 42294568-42297970 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002686`
名称	SmilChr04G002686
描述	heavy metal-associated isoprenylated plant protein 23-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	42294568 - 42297970 / `+`

ID 对照

NCBI Gene ID	`LOC131021793`
GeneID	`131021793`
locus_tag	`-`
NCBI Name	`LOC131021793`
原始查询	`LOC131021793`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	heavy metal-associated isoprenylated plant protein 23-like
产物	heavy metal-associated isoprenylated plant protein 23-like
Arabidopsis	`AT4G39700` (AT4G39700) Heavy metal transport/detoxification superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830125] identity=53.3; qcov=0.472; evalue=4.25e-16; confidence=low
Rice	`Os03g0383900` - identity=50; qcov=0.457; evalue=2.43e-13; confidence=low
GO	GO:0046872 (metal ion binding)
KEGG	-
Pfam	PF00403 (HMA)
InterPro	-
eggNOG	-
NR	GeneID:131021793

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.60000	`XP_057807066.1`
2	Nucleus	细胞核	0.40000	`XP_057807066.1`
3	Cytosol	细胞质基质	0.40000	`XP_057807067.1`
4	Cell membrane	细胞膜	0.20000	`XP_057807066.1`
5	Chromosome	染色体	0.00000	`XP_057807067.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:42294926`	`CA`	`C`	1bp_deletion	frameshift_variant	1	B91
`Chr4:42294926`	`CA`	`C`	1bp_deletion	CDS_variant	1	B91
`Chr4:42295020`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:42297434`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B122,C11,C69,D11
`Chr4:42297474`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C23
`Chr4:42297484`	`AG`	`A`	1bp_deletion	frameshift_variant	60	A1,A16,A23,A3,B100,B101,B104,B110,B111,B117,B119,B12,B121,B124,B127,B128,B129,B134,B135,B137,B25,B26,B28,B29,B33,B37,B4,B40,B55,B60,B68,B69,B71,B75,B77,B80,B81,B83,B89,B91,B93,B98,C12,C14,C16,C18,C20,C21,C26,C28,C33,C47,C5,C59,C62,C72,C85,C9,D2,D8
`Chr4:42297511`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B108,B27,C55
`Chr4:42297524`	`ACG`	`A`	2bp_deletion	frameshift_variant	12	A6,B111,B120,B132,B40,B62,B65,B82,C42,C60,C80,D5
`Chr4:42297529`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B108,B27,C55
`Chr4:42297530`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B130,B58
`Chr4:42297560`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:42297566`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807066.1

151 aa

151

HMA

PF00403 HMA 37-92 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807066.1`	Pfam	`PF00403`	HMA	Domain	37	92	4.7e-14	53.2	Heavy-metal-associated domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057951084.1
GGAAAAAGCTAATTGAAAAAGAGTTAGAAAATGGCTTTTAATAAGCTTTGTTGCTAACCTTTATTTCTCTGTTTGGAGGCAAGAAAATAATCCATTTCTTTTTAGGAAACTTTCTTGGAACTTCTCAATCTCATGGTAAATCTTCCTAATTTGCATTTTTTTTTCCCTCTCCCATTACCTTAATTTATTTGAAAACTTTATTTTCAAATTCTAATACCTTAAGCTTGAACTATACTAGCTAGTATATATTAAGTTATAGG...

XM_057951083.1
GGAAAAAGCTAATTGAAAAAGAGTTAGAAAATGGCTTTTAATAAGCTTTGTTGCTAACCTTTATTTCTCTGTTTGGAGGCAAGAAAATAATCCATTTCTTTTTAGGAAACTTTCTTGGAACTTCTCAATCTCATGGTAAATCTTCCTAATTTGCATTTTTTTTTCCCTCTCCCATTACCTTAATTTATTTGAAAACTTTATTTTCAAATTCTAATACCTTAAGCTTGAACTATACTAGCTAGTATATATTAAGTTATAGG...

CDS

2 records

下载 CDS FASTA

LOC131021793
ATGGGATTATCAGCAAGTTTTGAGTACATTTGTGATGTGATAAGCAGAAGTTATAAGCACAAGTTGAAGAAGAAGAAGATGATGAAAGAGATGCAGACAGTTAATCTCAAAGTGAGAATGGATTGTGATGGATGTGAGCTTAAAGTTAAGAAAGCCCTGTCTTCTTTGAGTGGAATGAAAAGGACCAATGCACCCATTTGGACCATCCATTATGTCTGTTCCGAGATATGTAAGGCTAGTACGGTTGGTGTGAATGAAGC...

LOC131021793
ATGGGATTATCAGCAAGTTTTGAGTACATTTGTGATGTGATAAGCAGAAGTTATAAGCACAAGTTGAAGAAGAAGAAGATGATGAAAGAGATGCAGACAGTTAATCTCAAAGTGAGAATGGATTGTGATGGATGTGAGCTTAAAGTTAAGAAAGCCCTGTCTTCTTTGAGTGGGGTAAAATCGGTGGAGATAAACAGGAAACAGCAGAAGGTGAGAGTAAGAGGATACATAGAGCAAAGCAAAGTACTGAAGAAGGCAAA...

Protein

2 records

下载 Protein FASTA

XP_057807066.1
MGLSASFEYICDVISRSYKHKLKKKKMMKEMQTVNLKVRMDCDGCELKVKKALSSLSGVKSVEINRKQQKVRVRGYIEQSKVLKKAKSTGKKAEMWPYVPYNLVAQPYAPGAYDIKAPPGFVRKLDNALSFDDHPYVTIFSDDNPNSCFIM

XP_057807067.1
MGLSASFEYICDVISRSYKHKLKKKKMMKEMQTVNLKVRMDCDGCELKVKKALSSLSGMKRTNAPIWTIHYVCSEICKASTVGVNEAINTIRANCFEIYPVYAMNERYEKISICTIYAKCASGDVLG

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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