当前解析结果
SmilChr01G000593| 统一新 Gene ID | SmilChr01G000593 |
|---|---|
| 名称 | SmilChr01G000593 |
| 描述 | uncharacterized SmilChr01G000593 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 12914528 - 12921843 / - |
| NCBI Gene ID | LOC131021814 |
|---|---|
| GeneID | 131021814 |
| locus_tag | - |
| NCBI Name | LOC131021814 |
| 原始查询 | LOC131021814 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0597300; species=rice; confidence=low |
| 产物 | hit=Os12g0597300; species=rice; confidence=low |
| Arabidopsis | AT1G06740 (MUG3)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3766669] identity=24.8; qcov=0.812; evalue=2.53e-51; confidence=weak |
| Rice | Os12g0597300- identity=27.8; qcov=0.819; evalue=1.65e-62; confidence=low |
| GO | GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00872 (Transposase_mut); PF04434 (SWIM); PF10551 (MULE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021814 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057807128.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057807128.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057807128.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057807128.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057807128.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:12914607 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B122,B67 |
Chr1:12914621 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A5,B126,B86,C56,C60 |
Chr1:12914652 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B2,B47,C45,C7,C75 |
Chr1:12914679 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B28,B32,B36,C33 |
Chr1:12914683 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B106,C14,C38,C46,C80 |
Chr1:12914692 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B28,B54,C43,C79,C87 |
Chr1:12914694 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A5,B120,B121,B67 |
Chr1:12914695 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B103,C31,D8 |
Chr1:12914697 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C80 |
Chr1:12914731 |
G |
A |
EMS_canonical_SNV | stop_gained | 11 | B101,B117,B140,B26,B51,B6,B85,C1,C10,C80,C87 |
Chr1:12914747 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B43,B84 |
Chr1:12914748 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B114,C20 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057807128.1PF10551
MULE 301-395 aa
PF00872
Transposase_mut 318-470 aa
PF04434
SWIM 546-576 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807128.1 |
Pfam | PF10551 |
MULE | Domain | 301 | 395 | 2.4e-19 | 70.2 | MULE transposase domain |
XP_057807128.1 |
Pfam | PF00872 |
Transposase_mut | Family | 318 | 470 | 6.3e-11 | 42.5 | Transposase, Mutator family |
XP_057807128.1 |
Pfam | PF04434 |
SWIM | Domain | 546 | 576 | 6.8e-08 | 32.6 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。