Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G002742

染色体: Chr04 坐标: 43082762-43085372 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G002742
名称SmilChr04G002742
描述F-box protein FBW2-like
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向43082762 - 43085372 / +

ID 对照

NCBI Gene IDLOC131021840
GeneID131021840
locus_tag-
NCBI NameLOC131021840
原始查询LOC131021840

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述F-box protein FBW2-like
产物F-box protein FBW2-like
ArabidopsisAT4G08980 (FBW2)
F-BOX WITH WD-40 2 [Source:NCBI gene (formerly Entrezgene);Acc:826476]
identity=52.7; qcov=1.03; evalue=9.1e-106; confidence=high
RiceOs06g0219700 (OsFbox304)
-
identity=52.6; qcov=1.01; evalue=4.57e-111; confidence=high
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131021840

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057807141.1
2 Cytoplasm 细胞质 0.40000 XP_057807141.1
3 Cytosol 细胞质基质 0.40000 XP_057807141.1
4 Chromosome 染色体 0.00000 XP_057807141.1
5 Centromere 着丝粒 0.00000 XP_057807141.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:43083906 G A EMS_canonical_SNV CDS_variant 1 C6
Chr4:43083916 C T EMS_canonical_SNV CDS_variant 1 C85
Chr4:43083931 C T EMS_canonical_SNV CDS_variant 5 B104,B23,B24,B48,D11
Chr4:43083933 G GAT 2bp_insertion frameshift_variant 219 A1,A10,A13,A14,A15,A16,A2,A20,A22,A23,A24,A25,A3,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B108,B109,B11,B110,B111,B114,B115,B117,B118,B119,B121,B122,B123,B124,B125,B126,B127,B129,B13,B131,B132,B134,B135,B136,B138,B14,B140,B15,B16,B17,B18,B19,B2,B21,B23,B25,B26,B28,B3,B30,B31,B32,B33,B34,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B46,B47,B48,B49,B5,B50,B51,B52,B54,B55,B56,B57,B59,B6,B60,B62,B64,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B74,B75,B76,B78,B79,B8,B80,B81,B83,B85,B87,B88,B89,B9,B90,B91,B92,B93,B95,B96,B97,B98,B99,C1,C10,C11,C12,C16,C17,C18,C19,C2,C21,C22,C23,C24,C25,C26,C28,C29,C3,C30,C31,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C49,C5,C50,C51,C52,C53,C54,C55,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C70,C71,C72,C73,C74,C75,C76,C78,C8,C80,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D2,D3,D5,D6,D7,D8,D9
Chr4:43083940 G A EMS_canonical_SNV CDS_variant 1 C58
Chr4:43084015 TG T 1bp_deletion frameshift_variant 110 A1,A10,A13,A14,A18,A19,A20,A23,A3,A6,A9,B1,B101,B104,B105,B109,B110,B111,B113,B117,B119,B122,B123,B125,B128,B13,B131,B134,B135,B137,B18,B2,B22,B26,B27,B31,B36,B38,B39,B40,B41,B42,B43,B44,B46,B48,B50,B53,B57,B6,B62,B64,B65,B68,B7,B71,B78,B8,B81,B82,B83,B85,B88,B89,B93,B94,B99,C11,C15,C17,C18,C19,C23,C24,C25,C27,C29,C30,C33,C37,C40,C41,C42,C44,C49,C50,C52,C53,C57,C6,C60,C62,C63,C64,C66,C67,C68,C69,C7,C71,C72,C74,C82,C84,C86,C87,D10,D3,D6,D7
Chr4:43084019 G A EMS_canonical_SNV CDS_variant 1 B33
Chr4:43084029 G GCA 2bp_insertion frameshift_variant 39 A24,A5,A6,B104,B114,B122,B131,B135,B136,B15,B2,B24,B28,B29,B47,B48,B61,B74,B80,B89,C10,C23,C28,C30,C33,C35,C4,C41,C42,C60,C62,C64,C78,C8,C80,C84,C86,D10,D11
Chr4:43084032 TG T 1bp_deletion frameshift_variant 220 A1,A10,A13,A14,A15,A16,A18,A19,A2,A20,A21,A22,A23,A25,A3,A4,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B109,B11,B110,B111,B113,B114,B115,B117,B118,B119,B12,B121,B123,B124,B125,B126,B127,B128,B129,B13,B130,B131,B133,B134,B135,B136,B137,B138,B139,B14,B140,B17,B18,B19,B2,B21,B22,B23,B25,B26,B27,B29,B30,B31,B32,B33,B34,B35,B36,B38,B39,B4,B40,B41,B42,B43,B44,B46,B48,B49,B50,B51,B52,B53,B54,B57,B58,B59,B6,B60,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B74,B75,B76,B77,B78,B79,B8,B81,B82,B83,B84,B85,B87,B88,B89,B9,B90,B91,B92,B93,B94,B95,B97,B98,B99,C10,C11,C12,C13,C15,C17,C18,C19,C2,C20,C21,C22,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C35,C36,C37,C38,C39,C40,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C6,C61,C63,C64,C65,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D2,D3,D6,D7,D8,D9
Chr4:43084043 G A EMS_canonical_SNV CDS_variant 1 B5
Chr4:43084073 G A EMS_canonical_SNV CDS_variant 4 B29,B73,B97,C77
Chr4:43084076 G A EMS_canonical_SNV CDS_variant 1 A18

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057951160.1
CGCTTTAAAAACAAAACCAAATTTCTGAGCAAACACTACTACTAAACACAGAGAGAGAGAGAGAGAGAGAGGAGAGGGAGAGAGAGAATCTCGGTTATATTTCGTCAGTTGCACGTATAATAGATACAACAGCTTTTGTTGGTATTCCTTTGTTTTCTTGTGTAGCTCTCCTATCCTCCCTCCCCCCTTCCTCTGTTCCTCATCCTTCAATTGCGTGGTTAAACCGTATGCTTTCACAGATCCAGATTACTGGTAGAGCT...
XM_057951158.1
TACTACTAAACACAGAGAGAGAGAGAGAGAGAGAGGAGAGGGAGAGAGAGAATCTCGGTTATATTTCGTCAGTTGCACGTATAATAGATACAACAGCTTTTGTTGGTATTCCTTTGTTTTCTTGTGTAGCTCTCCTATCCTCCCTCCCCCCTTCCTCTGTTCCTCATCCTTCAATTGCGTGGTTAAACCGTATGCTTTCACAGATCCAGATTACTGGTAGAGCTTAGGTAATTGTGCTCAGCTTCCAATTAGTAGTTCGT...

CDS

3 records

下载 CDS FASTA
LOC131021840
ATGGATGAGGCGTGTGATTTTCCGAAATGGGACGAACTGATACCAGATGCACTTGGGCTAATATTCAAGAATCTTTCTCTTGTTGAGCTGCTAACTGTAGTACCAAGAGTCTGCAAGTCTTGGGGAAGAGCGGTGTCTGGGCCGTATTGTTGGCAAGAGATAGACATTGTTGAATGGAGCAGGAATGGCAAGCCTGACATTGTTGAACGAATGCTTCGGTTACTCGTTTCAAGAAGCTGTGGCTCGCTGAGGAAACTATG...
LOC131021840
ATGGATGAGGCGTGTGATTTTCCGAAATGGGACGAACTGATACCAGATGCACTTGGGCTAATATTCAAGAATCTTTCTCTTGTTGAGCTGCTAACTGTAGTACCAAGAGTCTGCAAGTCTTGGGGAAGAGCGGTGTCTGGGCCGTATTGTTGGCAAGAGATAGACATTGTTGAATGGAGCAGGAATGGCAAGCCTGACATTGTTGAACGAATGCTTCGGTTACTCGTTTCAAGAAGCTGTGGCTCGCTGAGGAAACTATG...

Protein

3 records

下载 Protein FASTA
XP_057807141.1
MDEACDFPKWDELIPDALGLIFKNLSLVELLTVVPRVCKSWGRAVSGPYCWQEIDIVEWSRNGKPDIVERMLRLLVSRSCGSLRKLCVSGLASDQSIFFIVNHAQSLQTLQLPGSHVNNSVMERAAAMLSSLTCLDLSYCINIGAPALEAVGKHCKSLTTLRRVMHPLEVIDKLSQDDEALAIAATMPRLKHLEIAYLLVDTSSVVKILENCKQLELLDVRGCWNVKLDEKLVKRLPNLKVVGPLVVDFYDMNGWDNCSD...
XP_057807142.1
MDEACDFPKWDELIPDALGLIFKNLSLVELLTVVPRVCKSWGRAVSGPYCWQEIDIVEWSRNGKPDIVERMLRLLVSRSCGSLRKLCVSGLASDQSIFFIVNHAQSLQTLQLPGSHVNNSVMERAAAMLSSLTCLDLSYCINIGAPALEAVGKHCKSLTTLRRVMHPLEVIDKLSQDDEALAIAATMPRLKHLEIAYLLVDTSSVVKILENCKQLELLDVRGCWNVKLDEKLVKRLPNLKVVGPLVVDFYDMNGWDNCSD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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