Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002753`

染色体: Chr04 坐标: 43228900-43239407 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002753`
名称	SmilChr04G002753
描述	GPI ethanolamine phosphate transferase 2
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	43228900 - 43239407 / `-`

ID 对照

NCBI Gene ID	`LOC131021852`
GeneID	`131021852`
locus_tag	`-`
NCBI Name	`LOC131021852`
原始查询	`LOC131021852`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	GPI ethanolamine phosphate transferase 2
产物	GPI ethanolamine phosphate transferase 2
Arabidopsis	`AT2G22530` (AT2G22530) Alkaline-phosphatase-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:816786] identity=53; qcov=0.998; evalue=0; confidence=high
Rice	`Os02g0781600` - identity=49.8; qcov=1.03; evalue=0; confidence=high
GO	GO:0005789 (endoplasmic reticulum membrane); GO:0006506 (GPI anchor biosynthetic process); GO:0051267 (GO:0051267)
KEGG	smil00563 (Glycosylphosphatidylinositol (GPI)-anchor biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF01663 (Phosphodiest); PF19316 (PIGO_PIGG)
InterPro	-
eggNOG	-
NR	GeneID:131021852

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057807155.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057807155.1`
3	Nucleus membrane	核膜	0.20000	`XP_057807155.1`
4	Nucleus	细胞核	0.00000	`XP_057807156.1`
5	Chromosome	染色体	0.00000	`XP_057807156.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:43229594`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B40
`Chr4:43229651`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B1,B66,D11
`Chr4:43229684`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C2
`Chr4:43229723`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr4:43230811`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr4:43230849`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B112,B136,B44,C55
`Chr4:43230906`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:43231158`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr4:43231306`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C57
`Chr4:43231490`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C17
`Chr4:43231709`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr4:43231924`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B90,C31

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807155.1

967 aa

484

967

Phosphodiest

PIGO_PIGG

PF01663 Phosphodiest 224-306 aa PF19316 PIGO_PIGG 524-653 aa PF19316 PIGO_PIGG 767-956 aa

XP_057807156.1

966 aa

483

966

Phosphodiest

PIGO_PIGG

PF01663 Phosphodiest 224-306 aa PF19316 PIGO_PIGG 523-652 aa PF19316 PIGO_PIGG 766-955 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807155.1`	Pfam	`PF01663`	Phosphodiest	Family	224	306	9.5e-09	36.0	Type I phosphodiesterase / nucleotide pyrophosphatase
`XP_057807155.1`	Pfam	`PF19316`	PIGO_PIGG	Family	524	653	1.4e-27	97.5	GPI ethanolamine phosphate transferase membrane region
`XP_057807155.1`	Pfam	`PF19316`	PIGO_PIGG	Family	767	956	1.4e-27	97.5	GPI ethanolamine phosphate transferase membrane region
`XP_057807156.1`	Pfam	`PF01663`	Phosphodiest	Family	224	306	9.9e-09	36.0	Type I phosphodiesterase / nucleotide pyrophosphatase
`XP_057807156.1`	Pfam	`PF19316`	PIGO_PIGG	Family	523	652	1.4e-27	97.5	GPI ethanolamine phosphate transferase membrane region
`XP_057807156.1`	Pfam	`PF19316`	PIGO_PIGG	Family	766	955	1.4e-27	97.5	GPI ethanolamine phosphate transferase membrane region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057951173.1
CCGCCTTGAACAACACACAAACTCACTCCCACGCATCGCGAGAGCTCAACATAGCAGACAAATGCCAGCAAGAATGGGTAGTGACTACTCTTTGACATGCAAAAGGCTAACTCTTTTCACAGTTTCAGCTGTGGTGATCCAGATGATTGGTTTATATCTTTTCATCGTTGGTTTCTTTCCGGTGAAGCCTTCTCTCTCCGGCATGAGTGGATTGGAGAGCTTCTATCCGCCGGGTGTCGATTCGATTCATTTGGATAATA...

XM_057951172.1
CCGCCTTGAACAACACACAAACTCACTCCCACGCATCGCGAGAGCTCAACATAGCAGACAAATGCCAGCAAGAATGGGTAGTGACTACTCTTTGACATGCAAAAGGCTAACTCTTTTCACAGTTTCAGCTGTGGTGATCCAGATGATTGGTTTATATCTTTTCATCGTTGGTTTCTTTCCGGTGAAGCCTTCTCTCTCCGGCATGAGTGGATTGGAGAGCTTCTATCCGCCGGGTGTCGATTCGATTCATTTGGATAATA...

CDS

2 records

下载 CDS FASTA

LOC131021852
ATGCCAGCAAGAATGGGTAGTGACTACTCTTTGACATGCAAAAGGCTAACTCTTTTCACAGTTTCAGCTGTGGTGATCCAGATGATTGGTTTATATCTTTTCATCGTTGGTTTCTTTCCGGTGAAGCCTTCTCTCTCCGGCATGAGTGGATTGGAGAGCTTCTATCCGCCGGGTGTCGATTCGATTCATTTGGATAATAATATTTCTACCTTGCCTCCTGAAAAGCTCAAATCATTATACCAGGAACTATCTGGTGTTCC...

Protein

2 records

下载 Protein FASTA

XP_057807155.1
MPARMGSDYSLTCKRLTLFTVSAVVIQMIGLYLFIVGFFPVKPSLSGMSGLESFYPPGVDSIHLDNNISTLPPEKLKSLYQELSGVPPLYDRLILMVIDGLPAEFLLGKDGEPPPKVFMEAMPYTQSLLASGLAIGFHAKAAPPTVTMPRLKAMVSGAIGGFLDVASNFNTQAFLEDNLIAQFRRIGWKMTMLGDETWLKLFPNMFNRHDGVSSFFVKDTIEVDYNVSRHLTNELCCTDWDLLILHYLGLDHVGHIGGRN...

XP_057807156.1
MPARMGSDYSLTCKRLTLFTVSAVVIQMIGLYLFIVGFFPVKPSLSGMSGLESFYPPGVDSIHLDNNISTLPPEKLKSLYQELSGVPPLYDRLILMVIDGLPAEFLLGKDGEPPPKVFMEAMPYTQSLLASGLAIGFHAKAAPPTVTMPRLKAMVSGAIGGFLDVASNFNTQAFLEDNLIAQFRRIGWKMTMLGDETWLKLFPNMFNRHDGVSSFFVKDTIEVDYNVSRHLTNELCCTDWDLLILHYLGLDHVGHIGGRN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器