当前解析结果
SmilChr04G002787| 统一新 Gene ID | SmilChr04G002787 |
|---|---|
| 名称 | SmilChr04G002787 |
| 描述 | uncharacterized SmilChr04G002787 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 43725659 - 43730193 / - |
| NCBI Gene ID | LOC131021881 |
|---|---|
| GeneID | 131021881 |
| locus_tag | - |
| NCBI Name | LOC131021881 |
| 原始查询 | LOC131021881 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:831523]; symbol=AT5G16610; hit=AT5G16610; species=arabidopsis; confidence=medium |
| 产物 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:831523]; symbol=AT5G16610; hit=AT5G16610; species=arabidopsis; confidence=medium |
| Arabidopsis | AT5G16610 (AT5G16610)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:831523] identity=59.8; qcov=0.583; evalue=3.3e-133; confidence=medium |
| Rice | Os03g0221300 (ONAC057)- identity=68.1; qcov=0.462; evalue=7.67e-127; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021881 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057807190.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057807190.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057807190.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057807190.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057807190.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:43726498 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B60 |
Chr4:43728176 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A11,B128,B2,C62,D2 |
Chr4:43728584 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C58 |
Chr4:43729576 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B114,B131,B56,B96,C45 |
Chr4:43729660 |
ACT |
A |
2bp_deletion | frameshift_variant | 24 | A15,B115,B117,B122,B133,B137,B16,B24,B32,B36,B41,B50,B68,B71,B82,B99,C25,C32,C34,C37,C43,C48,C61,C68 |
Chr4:43729663 |
T |
TCG |
2bp_insertion | frameshift_variant | 24 | A15,B115,B117,B122,B133,B137,B16,B24,B32,B36,B41,B50,B68,B71,B82,B99,C25,C32,C34,C37,C43,C48,C61,C68 |
Chr4:43729905 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B114,B117 |
Chr4:43729931 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C80 |
Chr4:43729938 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B24,C24,C29 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。