当前解析结果
SmilChr04G002790| 统一新 Gene ID | SmilChr04G002790 |
|---|---|
| 名称 | SmilChr04G002790 |
| 描述 | putative pentatricopeptide repeat-containing protein At3g28640 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 43785267 - 43787247 / - |
| NCBI Gene ID | LOC131021883 |
|---|---|
| GeneID | 131021883 |
| locus_tag | - |
| NCBI Name | LOC131021883 |
| 原始查询 | LOC131021883 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative pentatricopeptide repeat-containing protein At3g28640 |
| 产物 | putative pentatricopeptide repeat-containing protein At3g28640 |
| Arabidopsis | AT4G21065 (AT4G21065)Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:5008150] identity=34.6; qcov=0.792; evalue=6.53e-92; confidence=low |
| Rice | Os02g0164600- identity=38.7; qcov=0.818; evalue=4.57e-106; confidence=medium |
| GO | GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF13812 (PPR_3); PF20431 (E_motif) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021883 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057807192.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057807192.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057807192.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057807192.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057807192.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:43785449 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C7 |
Chr4:43785463 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A22,B26,C49 |
Chr4:43785647 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B48,B60 |
Chr4:43785730 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A18,B97,C4 |
Chr4:43785739 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B110,B34,C4,D9 |
Chr4:43785744 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B102,B33,B34,B91 |
Chr4:43785822 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A7,C56,C58 |
Chr4:43785825 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | C12,C27,C35,C68,D3 |
Chr4:43785830 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B65,C79 |
Chr4:43785886 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A22,B26,C49 |
Chr4:43785888 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B114,B117,D11 |
Chr4:43785895 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B32 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057807192.1PF01535
PPR 197-224 aa
PF01535
PPR 225-252 aa
PF01535
PPR 301-324 aa
PF13812
PPR_3 322-376 aa
PF01535
PPR 331-358 aa
PF13812
PPR_3 360-413 aa
PF01535
PPR 367-395 aa
PF01535
PPR 404-429 aa
PF20431
E_motif 447-508 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807192.1 |
Pfam | PF01535 |
PPR | Repeat | 197 | 224 | 6.6e-34 | 114.5 | PPR repeat |
XP_057807192.1 |
Pfam | PF01535 |
PPR | Repeat | 225 | 252 | 6.6e-34 | 114.5 | PPR repeat |
XP_057807192.1 |
Pfam | PF01535 |
PPR | Repeat | 301 | 324 | 6.6e-34 | 114.5 | PPR repeat |
XP_057807192.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 322 | 376 | 2.1e-15 | 57.3 | Pentatricopeptide repeat domain |
XP_057807192.1 |
Pfam | PF01535 |
PPR | Repeat | 331 | 358 | 6.6e-34 | 114.5 | PPR repeat |
XP_057807192.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 360 | 413 | 2.1e-15 | 57.3 | Pentatricopeptide repeat domain |
XP_057807192.1 |
Pfam | PF01535 |
PPR | Repeat | 367 | 395 | 6.6e-34 | 114.5 | PPR repeat |
XP_057807192.1 |
Pfam | PF01535 |
PPR | Repeat | 404 | 429 | 6.6e-34 | 114.5 | PPR repeat |
XP_057807192.1 |
Pfam | PF20431 |
E_motif | Repeat | 447 | 508 | 4.2e-10 | 40.4 | E motif |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。