Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002798`

染色体: Chr04 坐标: 43886863-43888853 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002798`
名称	SmilChr04G002798
描述	DELLA protein GAI-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	43886863 - 43888853 / `-`

ID 对照

NCBI Gene ID	`LOC131021894`
GeneID	`131021894`
locus_tag	`-`
NCBI Name	`LOC131021894`
原始查询	`LOC131021894`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DELLA protein GAI-like
产物	DELLA protein GAI-like
Arabidopsis	`AT1G14920` (GAI) GRAS family transcription factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:838057] identity=62.2; qcov=1.02; evalue=0; confidence=high
Rice	`Os03g0707600` (SLR1) - identity=68; qcov=0.753; evalue=0; confidence=high
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription); GO:0009723 (response to ethylene); GO:0009737 (response to abscisic acid); GO:0009863 (salicylic acid mediated signaling pathway); GO:0009867 (jasmonic acid mediated signaling pathway); GO:0009938 (negative regulation of gibberellic acid mediated signaling pathway); GO:0010187 (negative regulation of seed germination); GO:0042538 (hyperosmotic salinity response); GO:0043565 (sequence-specific DNA binding); GO:2000033 (regulation of seed dormancy process); GO:2000377 (regulation of reactive oxygen species metabolic process)
KEGG	smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF03514 (GRAS); PF12041 (DELLA)
InterPro	-
eggNOG	-
NR	GeneID:131021894

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057807203.1`
2	Chromosome	染色体	0.00000	`XP_057807203.1`
3	Centromere	着丝粒	0.00000	`XP_057807203.1`
4	Chromatin	染色质	0.00000	`XP_057807203.1`
5	Telomere	端粒	0.00000	`XP_057807203.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:43887100`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr4:43887161`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C58
`Chr4:43887305`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B100,C56
`Chr4:43887893`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B52,B56,B96
`Chr4:43888064`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B71,B93,C33
`Chr4:43888202`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B25,C14,C18,C21
`Chr4:43888302`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B114,C17,D11
`Chr4:43888444`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A22,C49
`Chr4:43888565`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B107

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807203.1

515 aa

258

515

DELLA

GRAS

PF12041 DELLA 31-87 aa PF03514 GRAS 155-514 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807203.1`	Pfam	`PF12041`	DELLA	Domain	31	87	1.1e-26	93.3	Transcriptional regulator DELLA protein N terminal
`XP_057807203.1`	Pfam	`PF03514`	GRAS	Family	155	514	2.7e-130	435.4	GRAS domain family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057951220.1
GCTTCTCTTATCTTCTCCACTTCTCCCCTCTTCCGCTCAGTCCCTCCCATAGCTGTTCTATTTTACTGCCAAAAGAAAAAAGAAAAAAATAGAATAAAATAAAATTGATGCACAAAATCAAGAAGAAGAAGCAGTAGATTTGGAGTTCCAATCCACCCAATACTCGATGAAACGAGGTCGTGATCGTGGAAAGAGGGAGGAGGCGGGGTCCGCCATCAAGACGTGGGCGGAAGAGAAGCAGGCGGGCGCCGGAATGGATG...

CDS

1 records

下载 CDS FASTA

LOC131021894
ATGAAACGAGGTCGTGATCGTGGAAAGAGGGAGGAGGCGGGGTCCGCCATCAAGACGTGGGCGGAAGAGAAGCAGGCGGGCGCCGGAATGGATGAGCTATTCGCCGTGTTGGGCTACAAAGTGAAATCATCTGAAATGGCGGAAGTCGCGGAGAAGATGGAGCAGTTGGAGATGGCAATGGGGTCGGCCTTTCTCTCCGACGATACGGTTCACTACAACCCCTCCGATCTCTCCGGTTGGGTGGACAGCATGCTCACCAT...

Protein

1 records

下载 Protein FASTA

XP_057807203.1
MKRGRDRGKREEAGSAIKTWAEEKQAGAGMDELFAVLGYKVKSSEMAEVAEKMEQLEMAMGSAFLSDDTVHYNPSDLSGWVDSMLTISNQHGSSSSTPTTTAKFIRDDDLRAIPGGAIFSNSVSTKRLKFHENGEAAEEEEAARPVVLQEAGVRLVHGLMACAEAVQQDNLKLADALVKHVGILAVSQVGAMRRVATYFAEALARKIYKIFPPDSSYSDMLQMHFYETGPYLKFAHFTANQAILEAFNGAARVHVIDFGL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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